Hb_000154_130

Information

Type -
Description -
Location Contig154: 207888-216463
Sequence    

Annotation

kegg
ID rcu:RCOM_0454390
description RNA recognition motif-containing protein, putative
nr
ID XP_012065209.1
description PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
swissprot
ID Q8LPQ9
description Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2
trembl
ID A0A067L5Z2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20896 PE=4 SV=1
Gene Ontology
ID GO:0000166
description flowering time control protein fpa

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13249: 192027-208043 , PASA_asmbl_13251: 208289-208696 , PASA_asmbl_13252: 210837-212060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000154_130 0.0 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
2 Hb_000445_130 0.0716250851 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
3 Hb_007012_040 0.0779352608 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
4 Hb_000367_020 0.0805074683 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
5 Hb_011021_050 0.0863656799 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
6 Hb_003124_270 0.0868181469 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
7 Hb_001951_100 0.0888260848 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
8 Hb_021596_010 0.0900295208 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
9 Hb_002609_080 0.090872249 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
10 Hb_000928_090 0.0968472586 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
11 Hb_014006_010 0.0974845986 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
12 Hb_004551_020 0.0974862054 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
13 Hb_002078_470 0.0990267934 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
14 Hb_000844_050 0.1002027324 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
15 Hb_004204_010 0.1017332838 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
16 Hb_005181_050 0.1018038085 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
17 Hb_004306_120 0.1030450561 - - DNA binding protein, putative [Ricinus communis]
18 Hb_015183_080 0.1032293884 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
19 Hb_171554_040 0.1034070745 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
20 Hb_012490_010 0.1038855823 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000154_130 Hb_000154_130 Hb_000445_130 Hb_000445_130 Hb_000154_130--Hb_000445_130 Hb_007012_040 Hb_007012_040 Hb_000154_130--Hb_007012_040 Hb_000367_020 Hb_000367_020 Hb_000154_130--Hb_000367_020 Hb_011021_050 Hb_011021_050 Hb_000154_130--Hb_011021_050 Hb_003124_270 Hb_003124_270 Hb_000154_130--Hb_003124_270 Hb_001951_100 Hb_001951_100 Hb_000154_130--Hb_001951_100 Hb_000445_130--Hb_007012_040 Hb_000445_130--Hb_001951_100 Hb_015183_080 Hb_015183_080 Hb_000445_130--Hb_015183_080 Hb_000445_130--Hb_003124_270 Hb_000445_130--Hb_000367_020 Hb_007012_040--Hb_003124_270 Hb_004884_090 Hb_004884_090 Hb_007012_040--Hb_004884_090 Hb_171554_040 Hb_171554_040 Hb_007012_040--Hb_171554_040 Hb_004551_020 Hb_004551_020 Hb_007012_040--Hb_004551_020 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_000367_020--Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_000367_020--Hb_008686_020 Hb_005649_080 Hb_005649_080 Hb_000367_020--Hb_005649_080 Hb_001054_120 Hb_001054_120 Hb_000367_020--Hb_001054_120 Hb_004306_120 Hb_004306_120 Hb_011021_050--Hb_004306_120 Hb_005408_030 Hb_005408_030 Hb_011021_050--Hb_005408_030 Hb_002609_080 Hb_002609_080 Hb_011021_050--Hb_002609_080 Hb_000009_410 Hb_000009_410 Hb_011021_050--Hb_000009_410 Hb_000656_060 Hb_000656_060 Hb_011021_050--Hb_000656_060 Hb_005186_040 Hb_005186_040 Hb_011021_050--Hb_005186_040 Hb_000844_050 Hb_000844_050 Hb_003124_270--Hb_000844_050 Hb_003124_270--Hb_004884_090 Hb_005181_050 Hb_005181_050 Hb_003124_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_003124_270--Hb_000809_250 Hb_003680_020 Hb_003680_020 Hb_003124_270--Hb_003680_020 Hb_001951_100--Hb_008686_020 Hb_004696_070 Hb_004696_070 Hb_001951_100--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_001951_100--Hb_012490_010 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30514 6.29871 2.12461 2.55586 1.33128 1.45292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17693 1.07186 2.01338 3.31274 6.35979

CAGE analysis