Hb_004306_120

Information

Type -
Description -
Location Contig4306: 85818-99656
Sequence    

Annotation

kegg
ID rcu:RCOM_1719760
description DNA binding protein, putative
nr
ID XP_002521085.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID F4J7T3
description Chromatin modification-related protein EAF1 A OS=Arabidopsis thaliana GN=EAF1A PE=1 SV=1
trembl
ID B9S516
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1719760 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42185: 86220-87941 , PASA_asmbl_42186: 87957-89454 , PASA_asmbl_42187: 93386-93633 , PASA_asmbl_42188: 93651-95732 , PASA_asmbl_42191: 97081-97232 , PASA_asmbl_42192: 97285-98014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_120 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_002609_080 0.0530583403 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
3 Hb_011021_050 0.0629295699 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
4 Hb_003849_280 0.0631165678 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
5 Hb_000363_300 0.0791196835 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
6 Hb_005408_030 0.0816504613 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
7 Hb_001648_020 0.0818853154 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
8 Hb_011174_020 0.0820977354 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
9 Hb_004218_180 0.0837765364 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
10 Hb_012244_020 0.0839357114 - - calpain, putative [Ricinus communis]
11 Hb_033312_130 0.0873081752 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
12 Hb_012022_060 0.0875288299 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
13 Hb_005186_040 0.0877127497 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
14 Hb_002805_210 0.0878062544 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
15 Hb_001726_100 0.0888151042 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
16 Hb_000856_070 0.0895840556 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
17 Hb_000928_090 0.0914335652 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
18 Hb_000635_060 0.0923343841 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
19 Hb_001691_200 0.0923991602 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
20 Hb_017469_110 0.0926625719 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]

Gene co-expression network

sample Hb_004306_120 Hb_004306_120 Hb_002609_080 Hb_002609_080 Hb_004306_120--Hb_002609_080 Hb_011021_050 Hb_011021_050 Hb_004306_120--Hb_011021_050 Hb_003849_280 Hb_003849_280 Hb_004306_120--Hb_003849_280 Hb_000363_300 Hb_000363_300 Hb_004306_120--Hb_000363_300 Hb_005408_030 Hb_005408_030 Hb_004306_120--Hb_005408_030 Hb_001648_020 Hb_001648_020 Hb_004306_120--Hb_001648_020 Hb_002609_080--Hb_011021_050 Hb_001691_200 Hb_001691_200 Hb_002609_080--Hb_001691_200 Hb_001377_100 Hb_001377_100 Hb_002609_080--Hb_001377_100 Hb_002609_080--Hb_003849_280 Hb_005181_050 Hb_005181_050 Hb_002609_080--Hb_005181_050 Hb_011021_050--Hb_005408_030 Hb_000009_410 Hb_000009_410 Hb_011021_050--Hb_000009_410 Hb_000656_060 Hb_000656_060 Hb_011021_050--Hb_000656_060 Hb_005186_040 Hb_005186_040 Hb_011021_050--Hb_005186_040 Hb_011174_020 Hb_011174_020 Hb_003849_280--Hb_011174_020 Hb_033312_130 Hb_033312_130 Hb_003849_280--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_003849_280--Hb_001008_130 Hb_000844_050 Hb_000844_050 Hb_003849_280--Hb_000844_050 Hb_013459_020 Hb_013459_020 Hb_003849_280--Hb_013459_020 Hb_012244_020 Hb_012244_020 Hb_000363_300--Hb_012244_020 Hb_000363_300--Hb_011174_020 Hb_000363_300--Hb_001377_100 Hb_006031_010 Hb_006031_010 Hb_000363_300--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_000363_300--Hb_135572_010 Hb_012022_060 Hb_012022_060 Hb_000363_300--Hb_012022_060 Hb_005408_030--Hb_000009_410 Hb_005408_030--Hb_001648_020 Hb_001951_170 Hb_001951_170 Hb_005408_030--Hb_001951_170 Hb_005408_030--Hb_005186_040 Hb_000934_210 Hb_000934_210 Hb_005408_030--Hb_000934_210 Hb_001648_020--Hb_005186_040 Hb_001648_020--Hb_012244_020 Hb_001648_020--Hb_011174_020 Hb_001648_020--Hb_000934_210 Hb_001563_010 Hb_001563_010 Hb_001648_020--Hb_001563_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93033 6.99063 3.74762 3.81407 2.73623 2.81617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63106 3.20335 2.86981 5.79836 9.5354

CAGE analysis