Hb_003849_280

Information

Type -
Description -
Location Contig3849: 215743-238617
Sequence    

Annotation

kegg
ID pmum:103321921
description uncharacterized LOC103321921
nr
ID XP_012085873.1
description PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
swissprot
ID Q8RY46
description ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=2 SV=1
trembl
ID G7LJC4
description Nucleotide-diphospho-sugar transferase family protein OS=Medicago truncatula GN=MTR_8g069400 PE=4 SV=2
Gene Ontology
ID GO:0016021
description udp-galactose:fucoside alpha-3-galactosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38794: 217035-217628 , PASA_asmbl_38795: 218656-219051 , PASA_asmbl_38796: 221339-224378 , PASA_asmbl_38797: 221707-224124 , PASA_asmbl_38798: 223613-224135 , PASA_asmbl_38801: 224507-230294 , PASA_asmbl_38802: 227238-227424 , PASA_asmbl_38803: 231266-232383 , PASA_asmbl_38805: 234453-237146 , PASA_asmbl_38806: 235257-235402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_280 0.0 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
2 Hb_004306_120 0.0631165678 - - DNA binding protein, putative [Ricinus communis]
3 Hb_011174_020 0.0710113814 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
4 Hb_033312_130 0.0752309734 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
5 Hb_001008_130 0.0765079855 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
6 Hb_000844_050 0.0770594783 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
7 Hb_013459_020 0.0807405532 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
8 Hb_002609_080 0.0811894156 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
9 Hb_003680_020 0.0824776585 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_000363_300 0.0829259185 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
11 Hb_001477_020 0.0842947619 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
12 Hb_000196_060 0.0845659466 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
13 Hb_048476_080 0.0847776232 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
14 Hb_002357_070 0.0857829988 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
15 Hb_011021_050 0.0882241677 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
16 Hb_005181_050 0.0894266526 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
17 Hb_000960_080 0.0894555926 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
18 Hb_000270_170 0.0896503494 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
19 Hb_003417_040 0.0899491131 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
20 Hb_009288_020 0.0905364432 - - PREDICTED: protein FRIGIDA [Jatropha curcas]

Gene co-expression network

sample Hb_003849_280 Hb_003849_280 Hb_004306_120 Hb_004306_120 Hb_003849_280--Hb_004306_120 Hb_011174_020 Hb_011174_020 Hb_003849_280--Hb_011174_020 Hb_033312_130 Hb_033312_130 Hb_003849_280--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_003849_280--Hb_001008_130 Hb_000844_050 Hb_000844_050 Hb_003849_280--Hb_000844_050 Hb_013459_020 Hb_013459_020 Hb_003849_280--Hb_013459_020 Hb_002609_080 Hb_002609_080 Hb_004306_120--Hb_002609_080 Hb_011021_050 Hb_011021_050 Hb_004306_120--Hb_011021_050 Hb_000363_300 Hb_000363_300 Hb_004306_120--Hb_000363_300 Hb_005408_030 Hb_005408_030 Hb_004306_120--Hb_005408_030 Hb_001648_020 Hb_001648_020 Hb_004306_120--Hb_001648_020 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_001925_060 Hb_001925_060 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110 Hb_003929_210 Hb_003929_210 Hb_033312_130--Hb_003929_210 Hb_033312_130--Hb_001008_130 Hb_006100_020 Hb_006100_020 Hb_033312_130--Hb_006100_020 Hb_000960_080 Hb_000960_080 Hb_033312_130--Hb_000960_080 Hb_000035_100 Hb_000035_100 Hb_033312_130--Hb_000035_100 Hb_002357_070 Hb_002357_070 Hb_033312_130--Hb_002357_070 Hb_006210_010 Hb_006210_010 Hb_001008_130--Hb_006210_010 Hb_001008_130--Hb_006100_020 Hb_048476_080 Hb_048476_080 Hb_001008_130--Hb_048476_080 Hb_003680_020 Hb_003680_020 Hb_001008_130--Hb_003680_020 Hb_001008_130--Hb_000960_080 Hb_000844_050--Hb_048476_080 Hb_003124_270 Hb_003124_270 Hb_000844_050--Hb_003124_270 Hb_003661_010 Hb_003661_010 Hb_000844_050--Hb_003661_010 Hb_000844_050--Hb_003680_020 Hb_000809_250 Hb_000809_250 Hb_000844_050--Hb_000809_250 Hb_001507_050 Hb_001507_050 Hb_000844_050--Hb_001507_050 Hb_013459_020--Hb_017469_110 Hb_000826_070 Hb_000826_070 Hb_013459_020--Hb_000826_070 Hb_013459_020--Hb_011174_020 Hb_002973_110 Hb_002973_110 Hb_013459_020--Hb_002973_110 Hb_001999_140 Hb_001999_140 Hb_013459_020--Hb_001999_140 Hb_001008_070 Hb_001008_070 Hb_013459_020--Hb_001008_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.49178 9.27598 5.17234 6.52987 3.19562 4.26394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.93605 4.12213 2.58642 7.87312 12.4793

CAGE analysis