Hb_000363_300

Information

Type -
Description -
Location Contig363: 251574-267178
Sequence    

Annotation

kegg
ID rcu:RCOM_0046130
description protein binding protein, putative
nr
ID XP_012070950.1
description PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
swissprot
ID F4K3G5
description Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana GN=EDM2 PE=1 SV=1
trembl
ID A0A067KSR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00983 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37312: 251584-267102 , PASA_asmbl_37313: 264300-264728 , PASA_asmbl_37315: 259104-259530
cDNA
(Sanger)
(ID:Location)		 009_B22.ab1: 251584-254459

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_300 0.0 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
2 Hb_012244_020 0.0499603018 - - calpain, putative [Ricinus communis]
3 Hb_011174_020 0.0626564465 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
4 Hb_001377_100 0.0648685277 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
5 Hb_006031_010 0.0650218462 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
6 Hb_135572_010 0.0680930234 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
7 Hb_012022_060 0.0682103583 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
8 Hb_123531_010 0.0695031628 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
9 Hb_000925_090 0.0707816127 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
10 Hb_001726_100 0.0713894855 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
11 Hb_000934_210 0.0727850745 - - suppressor of ty, putative [Ricinus communis]
12 Hb_005186_040 0.0734096434 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
13 Hb_001124_050 0.0789884037 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
14 Hb_004306_120 0.0791196835 - - DNA binding protein, putative [Ricinus communis]
15 Hb_001133_030 0.0793025678 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
16 Hb_001648_020 0.0794614727 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
17 Hb_000568_050 0.0803541446 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
18 Hb_005211_020 0.0808613052 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
19 Hb_002521_020 0.0808702571 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
20 Hb_002007_110 0.0826877846 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_300 Hb_000363_300 Hb_012244_020 Hb_012244_020 Hb_000363_300--Hb_012244_020 Hb_011174_020 Hb_011174_020 Hb_000363_300--Hb_011174_020 Hb_001377_100 Hb_001377_100 Hb_000363_300--Hb_001377_100 Hb_006031_010 Hb_006031_010 Hb_000363_300--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_000363_300--Hb_135572_010 Hb_012022_060 Hb_012022_060 Hb_000363_300--Hb_012022_060 Hb_005186_040 Hb_005186_040 Hb_012244_020--Hb_005186_040 Hb_012244_020--Hb_011174_020 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_001925_060 Hb_001925_060 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110 Hb_009486_090 Hb_009486_090 Hb_001377_100--Hb_009486_090 Hb_001377_100--Hb_006031_010 Hb_001377_100--Hb_135572_010 Hb_001377_100--Hb_005186_040 Hb_001377_100--Hb_012244_020 Hb_000059_230 Hb_000059_230 Hb_001377_100--Hb_000059_230 Hb_006031_010--Hb_009486_090 Hb_002007_110 Hb_002007_110 Hb_006031_010--Hb_002007_110 Hb_006031_010--Hb_012244_020 Hb_001951_170 Hb_001951_170 Hb_006031_010--Hb_001951_170 Hb_123531_010 Hb_123531_010 Hb_006031_010--Hb_123531_010 Hb_007994_010 Hb_007994_010 Hb_135572_010--Hb_007994_010 Hb_004143_160 Hb_004143_160 Hb_135572_010--Hb_004143_160 Hb_000358_050 Hb_000358_050 Hb_135572_010--Hb_000358_050 Hb_000922_030 Hb_000922_030 Hb_135572_010--Hb_000922_030 Hb_012022_060--Hb_000934_210 Hb_013459_020 Hb_013459_020 Hb_012022_060--Hb_013459_020 Hb_002357_070 Hb_002357_070 Hb_012022_060--Hb_002357_070 Hb_000009_030 Hb_000009_030 Hb_012022_060--Hb_000009_030 Hb_000664_120 Hb_000664_120 Hb_012022_060--Hb_000664_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.3627 21.6536 11.6629 14.5255 12.7331 15.0419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.56772 7.4455 8.66179 20.9496 32.0948

CAGE analysis