Hb_005186_040

Information

Type -
Description -
Location Contig5186: 19193-46779
Sequence    

Annotation

kegg
ID cit:102621056
description mediator of RNA polymerase II transcription subunit 13-like
nr
ID XP_012067059.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
swissprot
ID F4I096
description Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis thaliana GN=MED13 PE=1 SV=1
trembl
ID A0A067L494
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01856 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 13 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46602: 19261-21118 , PASA_asmbl_46603: 21136-26580 , PASA_asmbl_46604: 25203-26580 , PASA_asmbl_46605: 26640-44260 , PASA_asmbl_46607: 44586-46728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005186_040 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
2 Hb_012244_020 0.0446586647 - - calpain, putative [Ricinus communis]
3 Hb_001648_020 0.0484504278 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
4 Hb_002521_020 0.0579039963 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
5 Hb_007441_160 0.0597098808 - - RNA binding protein, putative [Ricinus communis]
6 Hb_000672_040 0.0597732253 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
7 Hb_001377_100 0.0602299004 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
8 Hb_005408_030 0.0613059559 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
9 Hb_000261_150 0.0644825849 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008053_040 0.0648264473 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
11 Hb_001133_030 0.0671615985 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
12 Hb_006031_010 0.0678866088 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
13 Hb_000656_060 0.0686835451 - - DNA binding protein, putative [Ricinus communis]
14 Hb_001951_170 0.0731694689 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
15 Hb_000363_300 0.0734096434 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
16 Hb_000925_090 0.0737626392 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
17 Hb_011174_020 0.0738423586 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
18 Hb_006531_020 0.0740981879 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
19 Hb_002909_120 0.0742391399 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
20 Hb_000934_210 0.0745699808 - - suppressor of ty, putative [Ricinus communis]

Gene co-expression network

sample Hb_005186_040 Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_005186_040--Hb_012244_020 Hb_001648_020 Hb_001648_020 Hb_005186_040--Hb_001648_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_012244_020--Hb_001648_020 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210 Hb_005408_030 Hb_005408_030 Hb_001648_020--Hb_005408_030 Hb_001648_020--Hb_011174_020 Hb_001648_020--Hb_000934_210 Hb_001563_010 Hb_001563_010 Hb_001648_020--Hb_001563_010 Hb_010180_060 Hb_010180_060 Hb_002521_020--Hb_010180_060 Hb_001133_030 Hb_001133_030 Hb_002521_020--Hb_001133_030 Hb_001124_050 Hb_001124_050 Hb_002521_020--Hb_001124_050 Hb_009486_170 Hb_009486_170 Hb_002521_020--Hb_009486_170 Hb_002521_020--Hb_001377_100 Hb_007441_160--Hb_000672_040 Hb_001999_290 Hb_001999_290 Hb_007441_160--Hb_001999_290 Hb_000640_040 Hb_000640_040 Hb_007441_160--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_007441_160--Hb_001865_070 Hb_007441_160--Hb_012244_020 Hb_005736_020 Hb_005736_020 Hb_000672_040--Hb_005736_020 Hb_001227_080 Hb_001227_080 Hb_000672_040--Hb_001227_080 Hb_011671_410 Hb_011671_410 Hb_000672_040--Hb_011671_410 Hb_005486_030 Hb_005486_030 Hb_000672_040--Hb_005486_030 Hb_009486_090 Hb_009486_090 Hb_001377_100--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001377_100--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_001377_100--Hb_012244_020 Hb_000059_230 Hb_000059_230 Hb_001377_100--Hb_000059_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.15684 15.2371 5.77803 7.13829 7.25845 8.64468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.59602 5.50459 7.3844 11.1979 15.8517

CAGE analysis