Hb_005486_030

Information

Type transcription factor
Description TF Family: PHD
Location Contig5486: 45941-67240
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10890g
description POPTRDRAFT_668457; hypothetical protein
nr
ID XP_002324010.2
description hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
swissprot
ID Q9SGH2
description Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1
trembl
ID B9IJM9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s10890g PE=4 SV=2
Gene Ontology
ID GO:0005634
description methyl- -binding domain-containing protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48057: 47139-49968 , PASA_asmbl_48058: 54310-54765 , PASA_asmbl_48059: 55129-55458 , PASA_asmbl_48060: 50723-56366 , PASA_asmbl_48062: 58886-59317 , PASA_asmbl_48064: 59803-60936 , PASA_asmbl_48066: 66804-66907 , PASA_asmbl_48067: 66923-67154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005486_030 0.0 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
2 Hb_000130_490 0.0707372812 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
3 Hb_000672_040 0.0724535605 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
4 Hb_002316_160 0.0726837259 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
5 Hb_009767_080 0.0750210337 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
6 Hb_009898_010 0.0786642773 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
7 Hb_008053_040 0.0801583748 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
8 Hb_011671_410 0.0817310876 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
9 Hb_000574_400 0.0819445749 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
10 Hb_001268_380 0.0825231975 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
11 Hb_000031_170 0.0830826579 - - PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]
12 Hb_005348_010 0.0864632125 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002780_010 0.0872406742 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
14 Hb_005488_170 0.0904028364 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
15 Hb_140627_020 0.0906123365 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
16 Hb_000170_130 0.0908474878 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
17 Hb_062226_070 0.0919148611 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
18 Hb_000046_190 0.0927788247 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
19 Hb_007575_080 0.0928814945 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
20 Hb_019430_020 0.0958144011 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005486_030 Hb_005486_030 Hb_000130_490 Hb_000130_490 Hb_005486_030--Hb_000130_490 Hb_000672_040 Hb_000672_040 Hb_005486_030--Hb_000672_040 Hb_002316_160 Hb_002316_160 Hb_005486_030--Hb_002316_160 Hb_009767_080 Hb_009767_080 Hb_005486_030--Hb_009767_080 Hb_009898_010 Hb_009898_010 Hb_005486_030--Hb_009898_010 Hb_008053_040 Hb_008053_040 Hb_005486_030--Hb_008053_040 Hb_000130_490--Hb_002316_160 Hb_000130_490--Hb_009767_080 Hb_006718_020 Hb_006718_020 Hb_000130_490--Hb_006718_020 Hb_011671_410 Hb_011671_410 Hb_000130_490--Hb_011671_410 Hb_001999_290 Hb_001999_290 Hb_000130_490--Hb_001999_290 Hb_005186_040 Hb_005186_040 Hb_000672_040--Hb_005186_040 Hb_007441_160 Hb_007441_160 Hb_000672_040--Hb_007441_160 Hb_005736_020 Hb_005736_020 Hb_000672_040--Hb_005736_020 Hb_001227_080 Hb_001227_080 Hb_000672_040--Hb_001227_080 Hb_000672_040--Hb_011671_410 Hb_001999_090 Hb_001999_090 Hb_002316_160--Hb_001999_090 Hb_002316_160--Hb_009898_010 Hb_002316_160--Hb_006718_020 Hb_001865_070 Hb_001865_070 Hb_002316_160--Hb_001865_070 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009767_080--Hb_009898_010 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_002780_010 Hb_002780_010 Hb_009898_010--Hb_002780_010 Hb_002311_100 Hb_002311_100 Hb_009898_010--Hb_002311_100 Hb_005656_040 Hb_005656_040 Hb_009898_010--Hb_005656_040 Hb_007575_080 Hb_007575_080 Hb_008053_040--Hb_007575_080 Hb_003805_040 Hb_003805_040 Hb_008053_040--Hb_003805_040 Hb_008053_040--Hb_005186_040 Hb_002521_020 Hb_002521_020 Hb_008053_040--Hb_002521_020 Hb_000665_230 Hb_000665_230 Hb_008053_040--Hb_000665_230 Hb_024185_010 Hb_024185_010 Hb_008053_040--Hb_024185_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73372 6.37666 1.68872 2.67902 3.44817 4.06016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80456 2.41109 4.86481 3.04621 6.88506

CAGE analysis