Hb_000130_490

Information

Type -
Description -
Location Contig130: 437043-449822
Sequence    

Annotation

kegg
ID rcu:RCOM_0649850
description hypothetical protein
nr
ID XP_012076252.1
description PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
swissprot
ID P40340
description Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTA7 PE=1 SV=2
trembl
ID A0A067LM42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15299 PE=3 SV=1
Gene Ontology
ID GO:0005524
description p-loop containing nucleoside triphosphate hydrolases superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08952: 437461-438941 , PASA_asmbl_08953: 439258-444509 , PASA_asmbl_08954: 444644-448481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_490 0.0 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
2 Hb_002316_160 0.0526726601 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
3 Hb_005486_030 0.0707372812 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
4 Hb_009767_080 0.0731236664 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
5 Hb_006718_020 0.0792460606 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
6 Hb_011671_410 0.081144838 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
7 Hb_001999_290 0.0815133127 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
8 Hb_002316_150 0.0862388078 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
9 Hb_001865_070 0.0869643618 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
10 Hb_009898_010 0.0880026571 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
11 Hb_002780_010 0.0888001475 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
12 Hb_000866_120 0.0893904798 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
13 Hb_000890_050 0.0895904567 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
14 Hb_001999_090 0.0902247383 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
15 Hb_000270_670 0.0903835872 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
16 Hb_000172_110 0.0905438354 - - -
17 Hb_000574_400 0.0908196742 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
18 Hb_005736_020 0.091281645 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
19 Hb_000672_040 0.0923227357 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
20 Hb_062226_070 0.0924353528 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_490 Hb_000130_490 Hb_002316_160 Hb_002316_160 Hb_000130_490--Hb_002316_160 Hb_005486_030 Hb_005486_030 Hb_000130_490--Hb_005486_030 Hb_009767_080 Hb_009767_080 Hb_000130_490--Hb_009767_080 Hb_006718_020 Hb_006718_020 Hb_000130_490--Hb_006718_020 Hb_011671_410 Hb_011671_410 Hb_000130_490--Hb_011671_410 Hb_001999_290 Hb_001999_290 Hb_000130_490--Hb_001999_290 Hb_002316_160--Hb_005486_030 Hb_001999_090 Hb_001999_090 Hb_002316_160--Hb_001999_090 Hb_009898_010 Hb_009898_010 Hb_002316_160--Hb_009898_010 Hb_002316_160--Hb_006718_020 Hb_001865_070 Hb_001865_070 Hb_002316_160--Hb_001865_070 Hb_000672_040 Hb_000672_040 Hb_005486_030--Hb_000672_040 Hb_005486_030--Hb_009767_080 Hb_005486_030--Hb_009898_010 Hb_008053_040 Hb_008053_040 Hb_005486_030--Hb_008053_040 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009767_080--Hb_009898_010 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_002316_150 Hb_002316_150 Hb_006718_020--Hb_002316_150 Hb_006718_020--Hb_001999_090 Hb_000270_670 Hb_000270_670 Hb_006718_020--Hb_000270_670 Hb_007441_220 Hb_007441_220 Hb_006718_020--Hb_007441_220 Hb_000170_130 Hb_000170_130 Hb_011671_410--Hb_000170_130 Hb_005736_020 Hb_005736_020 Hb_011671_410--Hb_005736_020 Hb_000204_120 Hb_000204_120 Hb_011671_410--Hb_000204_120 Hb_011671_410--Hb_000672_040 Hb_062226_070 Hb_062226_070 Hb_011671_410--Hb_062226_070 Hb_011671_410--Hb_001999_290 Hb_001157_240 Hb_001157_240 Hb_001999_290--Hb_001157_240 Hb_000174_270 Hb_000174_270 Hb_001999_290--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_001999_290--Hb_004079_060 Hb_001999_290--Hb_005736_020 Hb_001004_060 Hb_001004_060 Hb_001999_290--Hb_001004_060 Hb_001999_290--Hb_062226_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.69183 12.0513 4.4663 5.51989 6.39095 6.58644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.28459 4.37464 12.397 6.7908 12.8888

CAGE analysis