Hb_002316_160

Information

Type transcription factor
Description TF Family: IWS1
Location Contig2316: 107630-115233
Sequence    

Annotation

kegg
ID rcu:RCOM_1511930
description hypothetical protein
nr
ID XP_012080117.1
description PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4R6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11513 PE=4 SV=1
Gene Ontology
ID GO:0005634
description bah helical bundle-like domain isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24378: 106603-110134 , PASA_asmbl_24379: 111868-112153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_160 0.0 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
2 Hb_000130_490 0.0526726601 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
3 Hb_005486_030 0.0726837259 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
4 Hb_001999_090 0.0771810899 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
5 Hb_009898_010 0.0780228684 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
6 Hb_006718_020 0.0787755706 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
7 Hb_001865_070 0.0812971288 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
8 Hb_002235_040 0.084733153 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
9 Hb_002780_010 0.0851410002 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
10 Hb_000270_670 0.0852898017 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
11 Hb_002316_150 0.0858119844 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
12 Hb_007441_220 0.0862281977 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
13 Hb_009767_080 0.0864331413 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
14 Hb_002063_020 0.0913029015 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
15 Hb_011671_410 0.0920895971 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
16 Hb_000366_040 0.0923817728 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
17 Hb_000890_050 0.0947574612 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
18 Hb_003910_060 0.0974999221 - - PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]
19 Hb_005736_020 0.0975327046 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
20 Hb_140627_020 0.0987573991 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002316_160 Hb_002316_160 Hb_000130_490 Hb_000130_490 Hb_002316_160--Hb_000130_490 Hb_005486_030 Hb_005486_030 Hb_002316_160--Hb_005486_030 Hb_001999_090 Hb_001999_090 Hb_002316_160--Hb_001999_090 Hb_009898_010 Hb_009898_010 Hb_002316_160--Hb_009898_010 Hb_006718_020 Hb_006718_020 Hb_002316_160--Hb_006718_020 Hb_001865_070 Hb_001865_070 Hb_002316_160--Hb_001865_070 Hb_000130_490--Hb_005486_030 Hb_009767_080 Hb_009767_080 Hb_000130_490--Hb_009767_080 Hb_000130_490--Hb_006718_020 Hb_011671_410 Hb_011671_410 Hb_000130_490--Hb_011671_410 Hb_001999_290 Hb_001999_290 Hb_000130_490--Hb_001999_290 Hb_000672_040 Hb_000672_040 Hb_005486_030--Hb_000672_040 Hb_005486_030--Hb_009767_080 Hb_005486_030--Hb_009898_010 Hb_008053_040 Hb_008053_040 Hb_005486_030--Hb_008053_040 Hb_002235_040 Hb_002235_040 Hb_001999_090--Hb_002235_040 Hb_004712_130 Hb_004712_130 Hb_001999_090--Hb_004712_130 Hb_001999_090--Hb_006718_020 Hb_007441_220 Hb_007441_220 Hb_001999_090--Hb_007441_220 Hb_027472_070 Hb_027472_070 Hb_001999_090--Hb_027472_070 Hb_009898_010--Hb_009767_080 Hb_002780_010 Hb_002780_010 Hb_009898_010--Hb_002780_010 Hb_002311_100 Hb_002311_100 Hb_009898_010--Hb_002311_100 Hb_005656_040 Hb_005656_040 Hb_009898_010--Hb_005656_040 Hb_002316_150 Hb_002316_150 Hb_006718_020--Hb_002316_150 Hb_000270_670 Hb_000270_670 Hb_006718_020--Hb_000270_670 Hb_006718_020--Hb_007441_220 Hb_002686_090 Hb_002686_090 Hb_001865_070--Hb_002686_090 Hb_007441_160 Hb_007441_160 Hb_001865_070--Hb_007441_160 Hb_005977_070 Hb_005977_070 Hb_001865_070--Hb_005977_070 Hb_001865_070--Hb_000672_040 Hb_005736_020 Hb_005736_020 Hb_001865_070--Hb_005736_020 Hb_001157_240 Hb_001157_240 Hb_001865_070--Hb_001157_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.24847 16.6333 4.14944 8.59212 8.60799 11.2199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.87137 6.69984 19.3862 11.2904 18.4335

CAGE analysis