Hb_002235_040

Information

Type -
Description -
Location Contig2235: 18644-20440
Sequence    

Annotation

kegg
ID rcu:RCOM_0169170
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012068951.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
swissprot
ID Q9LS72
description Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
trembl
ID B9T3T5
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0169170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
2 Hb_001999_090 0.0506791644 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
3 Hb_007441_220 0.0772746746 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
4 Hb_002316_150 0.0792174898 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
5 Hb_000417_200 0.0797596434 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
6 Hb_002316_160 0.084733153 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
7 Hb_012725_060 0.0854456602 - - protein binding protein, putative [Ricinus communis]
8 Hb_027472_070 0.0857041371 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
9 Hb_006718_020 0.0887945749 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
10 Hb_001865_070 0.0923320929 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
11 Hb_004712_130 0.0924563841 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
12 Hb_001405_070 0.0930832794 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
13 Hb_000366_040 0.0957069601 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
14 Hb_001242_130 0.0970972763 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
15 Hb_000964_130 0.0980505819 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
16 Hb_000130_490 0.0983900925 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
17 Hb_002007_160 0.0989916323 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
18 Hb_002918_180 0.1004179674 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
19 Hb_000603_110 0.1004579999 - - copper transporter, putative [Ricinus communis]
20 Hb_002063_020 0.1040797324 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_040 Hb_002235_040 Hb_001999_090 Hb_001999_090 Hb_002235_040--Hb_001999_090 Hb_007441_220 Hb_007441_220 Hb_002235_040--Hb_007441_220 Hb_002316_150 Hb_002316_150 Hb_002235_040--Hb_002316_150 Hb_000417_200 Hb_000417_200 Hb_002235_040--Hb_000417_200 Hb_002316_160 Hb_002316_160 Hb_002235_040--Hb_002316_160 Hb_012725_060 Hb_012725_060 Hb_002235_040--Hb_012725_060 Hb_004712_130 Hb_004712_130 Hb_001999_090--Hb_004712_130 Hb_006718_020 Hb_006718_020 Hb_001999_090--Hb_006718_020 Hb_001999_090--Hb_007441_220 Hb_001999_090--Hb_002316_160 Hb_027472_070 Hb_027472_070 Hb_001999_090--Hb_027472_070 Hb_000041_100 Hb_000041_100 Hb_007441_220--Hb_000041_100 Hb_007441_220--Hb_002316_150 Hb_001085_060 Hb_001085_060 Hb_007441_220--Hb_001085_060 Hb_000270_670 Hb_000270_670 Hb_007441_220--Hb_000270_670 Hb_000245_040 Hb_000245_040 Hb_007441_220--Hb_000245_040 Hb_002316_150--Hb_006718_020 Hb_002316_150--Hb_000270_670 Hb_000866_120 Hb_000866_120 Hb_002316_150--Hb_000866_120 Hb_000172_110 Hb_000172_110 Hb_002316_150--Hb_000172_110 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230 Hb_001405_070 Hb_001405_070 Hb_000417_200--Hb_001405_070 Hb_000417_200--Hb_012725_060 Hb_000170_130 Hb_000170_130 Hb_000417_200--Hb_000170_130 Hb_002686_090 Hb_002686_090 Hb_000417_200--Hb_002686_090 Hb_001242_130 Hb_001242_130 Hb_000417_200--Hb_001242_130 Hb_000130_490 Hb_000130_490 Hb_002316_160--Hb_000130_490 Hb_005486_030 Hb_005486_030 Hb_002316_160--Hb_005486_030 Hb_009898_010 Hb_009898_010 Hb_002316_160--Hb_009898_010 Hb_002316_160--Hb_006718_020 Hb_001865_070 Hb_001865_070 Hb_002316_160--Hb_001865_070 Hb_012725_060--Hb_001242_130 Hb_012725_060--Hb_027472_070 Hb_012725_060--Hb_001865_070 Hb_012725_060--Hb_001405_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.50888 0.911567 0.257719 0.427156 0.409502 0.425817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.330614 0.620299 1.09701 0.773033 0.927206

CAGE analysis