Hb_000417_200

Information

Type -
Description -
Location Contig417: 141494-144130
Sequence    

Annotation

kegg
ID tcc:TCM_029664
description Pentatricopeptide, putative
nr
ID XP_012092429.1
description PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
swissprot
ID Q9SN39
description Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana GN=DOT4 PE=2 SV=1
trembl
ID A0A061GEE9
description Pentatricopeptide, putative OS=Theobroma cacao GN=TCM_029664 PE=4 SV=1
Gene Ontology
ID GO:0010087
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41246: 141857-142165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_200 0.0 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
2 Hb_001405_070 0.0399203102 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
3 Hb_012725_060 0.077608591 - - protein binding protein, putative [Ricinus communis]
4 Hb_002235_040 0.0797596434 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
5 Hb_000170_130 0.0926542423 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
6 Hb_002686_090 0.0946005846 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
7 Hb_001242_130 0.0970657614 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
8 Hb_011671_410 0.0973888277 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
9 Hb_001999_090 0.1019752499 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
10 Hb_001865_070 0.1028256856 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
11 Hb_012506_040 0.1030634554 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
12 Hb_002988_040 0.1032249207 - - -
13 Hb_002542_110 0.1040385891 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
14 Hb_027472_070 0.1053273211 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
15 Hb_062226_070 0.1096911841 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
16 Hb_000230_500 0.1106783607 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
17 Hb_000640_040 0.1117039912 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
18 Hb_001716_040 0.1122038712 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
19 Hb_000635_060 0.1127723858 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
20 Hb_000482_040 0.1131788107 - - Protein YME1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000417_200 Hb_000417_200 Hb_001405_070 Hb_001405_070 Hb_000417_200--Hb_001405_070 Hb_012725_060 Hb_012725_060 Hb_000417_200--Hb_012725_060 Hb_002235_040 Hb_002235_040 Hb_000417_200--Hb_002235_040 Hb_000170_130 Hb_000170_130 Hb_000417_200--Hb_000170_130 Hb_002686_090 Hb_002686_090 Hb_000417_200--Hb_002686_090 Hb_001242_130 Hb_001242_130 Hb_000417_200--Hb_001242_130 Hb_011671_410 Hb_011671_410 Hb_001405_070--Hb_011671_410 Hb_001405_070--Hb_012725_060 Hb_000230_500 Hb_000230_500 Hb_001405_070--Hb_000230_500 Hb_002542_110 Hb_002542_110 Hb_001405_070--Hb_002542_110 Hb_001405_070--Hb_000170_130 Hb_012725_060--Hb_001242_130 Hb_027472_070 Hb_027472_070 Hb_012725_060--Hb_027472_070 Hb_001865_070 Hb_001865_070 Hb_012725_060--Hb_001865_070 Hb_012725_060--Hb_002235_040 Hb_001999_090 Hb_001999_090 Hb_002235_040--Hb_001999_090 Hb_007441_220 Hb_007441_220 Hb_002235_040--Hb_007441_220 Hb_002316_150 Hb_002316_150 Hb_002235_040--Hb_002316_150 Hb_002316_160 Hb_002316_160 Hb_002235_040--Hb_002316_160 Hb_000170_130--Hb_011671_410 Hb_012506_040 Hb_012506_040 Hb_000170_130--Hb_012506_040 Hb_000170_130--Hb_002686_090 Hb_000170_130--Hb_002542_110 Hb_006816_370 Hb_006816_370 Hb_000170_130--Hb_006816_370 Hb_062226_070 Hb_062226_070 Hb_000170_130--Hb_062226_070 Hb_000640_040 Hb_000640_040 Hb_002686_090--Hb_000640_040 Hb_002686_090--Hb_001865_070 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_001716_040 Hb_001716_040 Hb_002686_090--Hb_001716_040 Hb_002686_090--Hb_002542_110 Hb_001242_130--Hb_027472_070 Hb_004712_130 Hb_004712_130 Hb_001242_130--Hb_004712_130 Hb_000479_140 Hb_000479_140 Hb_001242_130--Hb_000479_140 Hb_000497_300 Hb_000497_300 Hb_001242_130--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001242_130--Hb_001352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.398612 1.13154 0.414974 0.521279 0.447714 0.391743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383556 0.839846 1.12696 0.729269 1.34047

CAGE analysis