Hb_006816_370

Information

Type transcription factor
Description TF Family: PHD
Location Contig6816: 224514-228039
Sequence    

Annotation

kegg
ID rcu:RCOM_1434330
description splicing factor, arginine/serine-rich 2,rnap interacting protein, putative
nr
ID XP_012088947.1
description PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
swissprot
ID Q9P1Y6
description PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3
trembl
ID B9RFG0
description Splicing factor, arginine/serine-rich 2,rnap interacting protein, putative OS=Ricinus communis GN=RCOM_1434330 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53836: 224850-228113
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_370 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
2 Hb_001563_010 0.0456018194 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
3 Hb_001648_020 0.0715136437 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
4 Hb_001005_130 0.074521385 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
5 Hb_000170_130 0.0837279939 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
6 Hb_000538_280 0.0845495252 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
7 Hb_000193_330 0.0854975502 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
8 Hb_000672_040 0.085756797 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
9 Hb_001488_180 0.0859539739 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
10 Hb_000445_090 0.0863451346 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
11 Hb_005701_130 0.0867232681 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
12 Hb_009150_020 0.0880070148 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
13 Hb_000856_070 0.0897521041 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
14 Hb_002600_060 0.0900686882 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
15 Hb_012244_020 0.0900970153 - - calpain, putative [Ricinus communis]
16 Hb_003417_040 0.0910553019 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
17 Hb_017469_110 0.0936785737 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
18 Hb_004899_260 0.0942111004 - - PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
19 Hb_001999_290 0.0950956599 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
20 Hb_009288_020 0.0953228748 - - PREDICTED: protein FRIGIDA [Jatropha curcas]

Gene co-expression network

sample Hb_006816_370 Hb_006816_370 Hb_001563_010 Hb_001563_010 Hb_006816_370--Hb_001563_010 Hb_001648_020 Hb_001648_020 Hb_006816_370--Hb_001648_020 Hb_001005_130 Hb_001005_130 Hb_006816_370--Hb_001005_130 Hb_000170_130 Hb_000170_130 Hb_006816_370--Hb_000170_130 Hb_000538_280 Hb_000538_280 Hb_006816_370--Hb_000538_280 Hb_000193_330 Hb_000193_330 Hb_006816_370--Hb_000193_330 Hb_001563_010--Hb_001648_020 Hb_009150_020 Hb_009150_020 Hb_001563_010--Hb_009150_020 Hb_000579_010 Hb_000579_010 Hb_001563_010--Hb_000579_010 Hb_000181_340 Hb_000181_340 Hb_001563_010--Hb_000181_340 Hb_001488_180 Hb_001488_180 Hb_001563_010--Hb_001488_180 Hb_005186_040 Hb_005186_040 Hb_001648_020--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001648_020--Hb_012244_020 Hb_005408_030 Hb_005408_030 Hb_001648_020--Hb_005408_030 Hb_011174_020 Hb_011174_020 Hb_001648_020--Hb_011174_020 Hb_000934_210 Hb_000934_210 Hb_001648_020--Hb_000934_210 Hb_001005_130--Hb_000193_330 Hb_001005_130--Hb_000538_280 Hb_000665_120 Hb_000665_120 Hb_001005_130--Hb_000665_120 Hb_000007_010 Hb_000007_010 Hb_001005_130--Hb_000007_010 Hb_001377_190 Hb_001377_190 Hb_001005_130--Hb_001377_190 Hb_011671_410 Hb_011671_410 Hb_000170_130--Hb_011671_410 Hb_012506_040 Hb_012506_040 Hb_000170_130--Hb_012506_040 Hb_002686_090 Hb_002686_090 Hb_000170_130--Hb_002686_090 Hb_002542_110 Hb_002542_110 Hb_000170_130--Hb_002542_110 Hb_062226_070 Hb_062226_070 Hb_000170_130--Hb_062226_070 Hb_003040_050 Hb_003040_050 Hb_000538_280--Hb_003040_050 Hb_000538_280--Hb_000193_330 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230 Hb_005701_130 Hb_005701_130 Hb_000538_280--Hb_005701_130 Hb_000193_330--Hb_003040_050 Hb_000193_330--Hb_000181_340 Hb_001163_060 Hb_001163_060 Hb_000193_330--Hb_001163_060 Hb_004003_040 Hb_004003_040 Hb_000193_330--Hb_004003_040 Hb_007763_070 Hb_007763_070 Hb_000193_330--Hb_007763_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8894 25.3705 12.4757 11.8091 12.9495 11.83
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1112 11.7101 11.8269 10.6593 30.0495

CAGE analysis