Hb_001005_130

Information

Type -
Description -
Location Contig1005: 113859-124216
Sequence    

Annotation

kegg
ID rcu:RCOM_1445020
description hypothetical protein
nr
ID XP_012067364.1
description PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
swissprot
ID Q6P4L9
description Nuclear factor related to kappa-B-binding protein OS=Xenopus tropicalis GN=nfrkb PE=2 SV=1
trembl
ID A0A067LCP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26882 PE=4 SV=1
Gene Ontology
ID GO:0031011
description nuclear factor kappa-b-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00332: 113981-124176 , PASA_asmbl_00333: 121866-123627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_130 0.0 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
2 Hb_000193_330 0.0712768114 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
3 Hb_000538_280 0.072808823 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
4 Hb_006816_370 0.074521385 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
5 Hb_000665_120 0.0798943909 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
6 Hb_000007_010 0.0800539479 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
7 Hb_001377_190 0.0830375369 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
8 Hb_007765_100 0.0848438413 - - PREDICTED: helicase SKI2W [Jatropha curcas]
9 Hb_004003_040 0.0870792878 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_001563_010 0.0888411924 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
11 Hb_017469_110 0.0889337664 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
12 Hb_000599_270 0.0905131732 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
13 Hb_000906_100 0.0932553773 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
14 Hb_001279_040 0.0934535134 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
15 Hb_000795_040 0.0940563772 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
16 Hb_008059_010 0.0951787576 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
17 Hb_003040_050 0.0956035098 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
18 Hb_002218_090 0.0963333564 - - Poly(rC)-binding protein, putative [Ricinus communis]
19 Hb_003203_030 0.0964839349 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
20 Hb_002600_060 0.0966735402 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_001005_130 Hb_001005_130 Hb_000193_330 Hb_000193_330 Hb_001005_130--Hb_000193_330 Hb_000538_280 Hb_000538_280 Hb_001005_130--Hb_000538_280 Hb_006816_370 Hb_006816_370 Hb_001005_130--Hb_006816_370 Hb_000665_120 Hb_000665_120 Hb_001005_130--Hb_000665_120 Hb_000007_010 Hb_000007_010 Hb_001005_130--Hb_000007_010 Hb_001377_190 Hb_001377_190 Hb_001005_130--Hb_001377_190 Hb_000193_330--Hb_000538_280 Hb_003040_050 Hb_003040_050 Hb_000193_330--Hb_003040_050 Hb_000181_340 Hb_000181_340 Hb_000193_330--Hb_000181_340 Hb_001163_060 Hb_001163_060 Hb_000193_330--Hb_001163_060 Hb_004003_040 Hb_004003_040 Hb_000193_330--Hb_004003_040 Hb_007763_070 Hb_007763_070 Hb_000193_330--Hb_007763_070 Hb_000538_280--Hb_003040_050 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230 Hb_005701_130 Hb_005701_130 Hb_000538_280--Hb_005701_130 Hb_001563_010 Hb_001563_010 Hb_006816_370--Hb_001563_010 Hb_001648_020 Hb_001648_020 Hb_006816_370--Hb_001648_020 Hb_000170_130 Hb_000170_130 Hb_006816_370--Hb_000170_130 Hb_006816_370--Hb_000538_280 Hb_006816_370--Hb_000193_330 Hb_007765_100 Hb_007765_100 Hb_000665_120--Hb_007765_100 Hb_000797_040 Hb_000797_040 Hb_000665_120--Hb_000797_040 Hb_028960_020 Hb_028960_020 Hb_000665_120--Hb_028960_020 Hb_002205_030 Hb_002205_030 Hb_000665_120--Hb_002205_030 Hb_008059_010 Hb_008059_010 Hb_000665_120--Hb_008059_010 Hb_002811_270 Hb_002811_270 Hb_000665_120--Hb_002811_270 Hb_000749_090 Hb_000749_090 Hb_000007_010--Hb_000749_090 Hb_000856_070 Hb_000856_070 Hb_000007_010--Hb_000856_070 Hb_001589_010 Hb_001589_010 Hb_000007_010--Hb_001589_010 Hb_001790_080 Hb_001790_080 Hb_000007_010--Hb_001790_080 Hb_018118_010 Hb_018118_010 Hb_000007_010--Hb_018118_010 Hb_007413_010 Hb_007413_010 Hb_001377_190--Hb_007413_010 Hb_000189_600 Hb_000189_600 Hb_001377_190--Hb_000189_600 Hb_006913_020 Hb_006913_020 Hb_001377_190--Hb_006913_020 Hb_000363_310 Hb_000363_310 Hb_001377_190--Hb_000363_310 Hb_000749_010 Hb_000749_010 Hb_001377_190--Hb_000749_010 Hb_001925_060 Hb_001925_060 Hb_001377_190--Hb_001925_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9941 22.135 17.2197 11.9053 12.6037 12.9035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4681 9.26875 12.0705 12.5 30.5438

CAGE analysis