Hb_000856_070

Information

Type -
Description -
Location Contig856: 45183-55048
Sequence    

Annotation

kegg
ID egr:104426318
description uncharacterized LOC104426318
nr
ID XP_012080179.1
description PREDICTED: formin-like protein 5 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4N9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11562 PE=4 SV=1
Gene Ontology
ID GO:0006396
description formin-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_070 0.0 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
2 Hb_000656_060 0.0780765616 - - DNA binding protein, putative [Ricinus communis]
3 Hb_012244_020 0.0786877926 - - calpain, putative [Ricinus communis]
4 Hb_011021_050 0.0791786515 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
5 Hb_000925_090 0.0799092966 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
6 Hb_097185_010 0.0807147955 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
7 Hb_005408_030 0.0817457116 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
8 Hb_000795_040 0.0836089945 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
9 Hb_011174_020 0.0842904834 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
10 Hb_001648_020 0.0857942567 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
11 Hb_000007_010 0.0866513893 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
12 Hb_002581_010 0.0875817444 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
13 Hb_000958_050 0.0883573113 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
14 Hb_005186_040 0.0884497357 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
15 Hb_004306_120 0.0895840556 - - DNA binding protein, putative [Ricinus communis]
16 Hb_001726_100 0.0896880598 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
17 Hb_006816_370 0.0897521041 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
18 Hb_000664_120 0.0922576232 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
19 Hb_000083_070 0.092321897 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
20 Hb_001008_070 0.0930827993 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000856_070 Hb_000856_070 Hb_000656_060 Hb_000656_060 Hb_000856_070--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_000856_070--Hb_012244_020 Hb_011021_050 Hb_011021_050 Hb_000856_070--Hb_011021_050 Hb_000925_090 Hb_000925_090 Hb_000856_070--Hb_000925_090 Hb_097185_010 Hb_097185_010 Hb_000856_070--Hb_097185_010 Hb_005408_030 Hb_005408_030 Hb_000856_070--Hb_005408_030 Hb_005186_040 Hb_005186_040 Hb_000656_060--Hb_005186_040 Hb_000656_060--Hb_011021_050 Hb_001726_050 Hb_001726_050 Hb_000656_060--Hb_001726_050 Hb_000261_150 Hb_000261_150 Hb_000656_060--Hb_000261_150 Hb_001726_100 Hb_001726_100 Hb_000656_060--Hb_001726_100 Hb_012244_020--Hb_005186_040 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_012244_020--Hb_000925_090 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210 Hb_004306_120 Hb_004306_120 Hb_011021_050--Hb_004306_120 Hb_011021_050--Hb_005408_030 Hb_002609_080 Hb_002609_080 Hb_011021_050--Hb_002609_080 Hb_000009_410 Hb_000009_410 Hb_011021_050--Hb_000009_410 Hb_011021_050--Hb_005186_040 Hb_001133_030 Hb_001133_030 Hb_000925_090--Hb_001133_030 Hb_002600_060 Hb_002600_060 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_000925_090--Hb_001726_100 Hb_000958_050 Hb_000958_050 Hb_097185_010--Hb_000958_050 Hb_002174_030 Hb_002174_030 Hb_097185_010--Hb_002174_030 Hb_097185_010--Hb_000083_070 Hb_011689_030 Hb_011689_030 Hb_097185_010--Hb_011689_030 Hb_002350_010 Hb_002350_010 Hb_097185_010--Hb_002350_010 Hb_005408_030--Hb_000009_410 Hb_005408_030--Hb_001648_020 Hb_001951_170 Hb_001951_170 Hb_005408_030--Hb_001951_170 Hb_005408_030--Hb_005186_040 Hb_005408_030--Hb_000934_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08791 5.97914 2.87929 2.1594 2.29321 2.42299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79861 2.32945 2.06733 4.0645 6.92043

CAGE analysis