Hb_002174_030

Information

Type -
Description -
Location Contig2174: 36465-48541
Sequence    

Annotation

kegg
ID rcu:RCOM_0122480
description transcription elongation factor s-II, putative
nr
ID XP_002532142.1
description transcription elongation factor s-II, putative [Ricinus communis]
swissprot
ID Q92576
description PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
trembl
ID B9T1M3
description Transcription elongation factor s-II, putative OS=Ricinus communis GN=RCOM_0122480 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor s-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22457: 36893-37330 , PASA_asmbl_22458: 37385-37587 , PASA_asmbl_22460: 39202-39522 , PASA_asmbl_22461: 40322-40583 , PASA_asmbl_22462: 41376-41842 , PASA_asmbl_22464: 43981-44565 , PASA_asmbl_22466: 46369-46704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002174_030 0.0 - - transcription elongation factor s-II, putative [Ricinus communis]
2 Hb_011689_030 0.0631401576 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
3 Hb_000025_320 0.0641001699 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
4 Hb_005357_260 0.0666760135 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
5 Hb_001191_120 0.0684418713 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
6 Hb_000099_040 0.0706470542 - - unnamed protein product [Coffea canephora]
7 Hb_000176_100 0.0734362245 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
8 Hb_000665_230 0.0734701741 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
9 Hb_000025_710 0.0767592367 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
10 Hb_000083_070 0.0777185974 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
11 Hb_000661_130 0.0786355935 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
12 Hb_012194_030 0.0789089067 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
13 Hb_004483_040 0.0794104606 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
14 Hb_000703_130 0.081027742 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
15 Hb_009150_020 0.0813940944 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
16 Hb_002085_030 0.0817024786 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
17 Hb_002350_010 0.0817124391 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
18 Hb_097185_010 0.0820082894 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
19 Hb_009767_080 0.0828753676 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
20 Hb_019430_020 0.0833121558 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002174_030 Hb_002174_030 Hb_011689_030 Hb_011689_030 Hb_002174_030--Hb_011689_030 Hb_000025_320 Hb_000025_320 Hb_002174_030--Hb_000025_320 Hb_005357_260 Hb_005357_260 Hb_002174_030--Hb_005357_260 Hb_001191_120 Hb_001191_120 Hb_002174_030--Hb_001191_120 Hb_000099_040 Hb_000099_040 Hb_002174_030--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_002174_030--Hb_000176_100 Hb_000665_230 Hb_000665_230 Hb_011689_030--Hb_000665_230 Hb_011689_030--Hb_005357_260 Hb_011689_030--Hb_000176_100 Hb_001133_030 Hb_001133_030 Hb_011689_030--Hb_001133_030 Hb_009486_170 Hb_009486_170 Hb_011689_030--Hb_009486_170 Hb_000958_050 Hb_000958_050 Hb_011689_030--Hb_000958_050 Hb_000671_070 Hb_000671_070 Hb_000025_320--Hb_000671_070 Hb_000025_320--Hb_001191_120 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_000960_100 Hb_000960_100 Hb_000025_320--Hb_000960_100 Hb_002022_070 Hb_002022_070 Hb_000025_320--Hb_002022_070 Hb_006420_040 Hb_006420_040 Hb_000025_320--Hb_006420_040 Hb_005357_260--Hb_000176_100 Hb_005402_040 Hb_005402_040 Hb_005357_260--Hb_005402_040 Hb_011202_020 Hb_011202_020 Hb_005357_260--Hb_011202_020 Hb_005357_260--Hb_000665_230 Hb_003124_160 Hb_003124_160 Hb_005357_260--Hb_003124_160 Hb_001191_120--Hb_000671_070 Hb_002350_010 Hb_002350_010 Hb_001191_120--Hb_002350_010 Hb_000025_710 Hb_000025_710 Hb_001191_120--Hb_000025_710 Hb_000243_210 Hb_000243_210 Hb_001191_120--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_001191_120--Hb_000914_120 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_000099_040--Hb_000243_210 Hb_001673_050 Hb_001673_050 Hb_000099_040--Hb_001673_050 Hb_001318_070 Hb_001318_070 Hb_000099_040--Hb_001318_070 Hb_001279_120 Hb_001279_120 Hb_000099_040--Hb_001279_120 Hb_001534_210 Hb_001534_210 Hb_000099_040--Hb_001534_210 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_003581_170 Hb_003581_170 Hb_000176_100--Hb_003581_170 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.77631 11.6496 5.9934 3.56422 7.10571 6.778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.23232 3.41759 6.09742 7.6527 9.08338

CAGE analysis