Hb_011689_030

Information

Type -
Description -
Location Contig11689: 29656-41318
Sequence    

Annotation

kegg
ID rcu:RCOM_0678840
description 80 kD MCM3-associated protein, putative
nr
ID XP_002516820.1
description 80 kD MCM3-associated protein, putative [Ricinus communis]
swissprot
ID Q9WUU9
description Germinal-center associated nuclear protein OS=Mus musculus GN=Mcm3ap PE=1 SV=2
trembl
ID B9RSV1
description 80 kD MCM3-associated protein, putative OS=Ricinus communis GN=RCOM_0678840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05227: 31303-32670 , PASA_asmbl_05228: 33499-37380 , PASA_asmbl_05229: 40033-41270 , PASA_asmbl_05230: 39442-41262 , PASA_asmbl_05231: 40255-40721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_030 0.0 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
2 Hb_000665_230 0.0434022114 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
3 Hb_005357_260 0.0456960885 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
4 Hb_000176_100 0.056682363 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
5 Hb_001133_030 0.0592509887 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
6 Hb_009486_170 0.0607627835 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
7 Hb_000958_050 0.0630073839 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
8 Hb_002174_030 0.0631401576 - - transcription elongation factor s-II, putative [Ricinus communis]
9 Hb_011202_020 0.0674318807 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
10 Hb_000703_130 0.0689689692 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
11 Hb_003805_040 0.0712310688 - - Sacsin [Glycine soja]
12 Hb_000025_710 0.0739997727 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
13 Hb_005402_040 0.0741250239 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
14 Hb_001235_230 0.0743063454 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
15 Hb_000099_040 0.0748436233 - - unnamed protein product [Coffea canephora]
16 Hb_000265_090 0.0758078611 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
17 Hb_003124_160 0.0758187116 - - dynamin, putative [Ricinus communis]
18 Hb_002909_120 0.0763026806 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
19 Hb_000003_410 0.0764939517 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
20 Hb_000083_070 0.0766493767 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011689_030 Hb_011689_030 Hb_000665_230 Hb_000665_230 Hb_011689_030--Hb_000665_230 Hb_005357_260 Hb_005357_260 Hb_011689_030--Hb_005357_260 Hb_000176_100 Hb_000176_100 Hb_011689_030--Hb_000176_100 Hb_001133_030 Hb_001133_030 Hb_011689_030--Hb_001133_030 Hb_009486_170 Hb_009486_170 Hb_011689_030--Hb_009486_170 Hb_000958_050 Hb_000958_050 Hb_011689_030--Hb_000958_050 Hb_003805_040 Hb_003805_040 Hb_000665_230--Hb_003805_040 Hb_000665_230--Hb_009486_170 Hb_000665_230--Hb_000176_100 Hb_000665_230--Hb_001133_030 Hb_002007_110 Hb_002007_110 Hb_000665_230--Hb_002007_110 Hb_005357_260--Hb_000176_100 Hb_005402_040 Hb_005402_040 Hb_005357_260--Hb_005402_040 Hb_011202_020 Hb_011202_020 Hb_005357_260--Hb_011202_020 Hb_005357_260--Hb_000665_230 Hb_003124_160 Hb_003124_160 Hb_005357_260--Hb_003124_160 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_003581_170 Hb_003581_170 Hb_000176_100--Hb_003581_170 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130 Hb_000925_090 Hb_000925_090 Hb_001133_030--Hb_000925_090 Hb_001133_030--Hb_009486_170 Hb_012244_020 Hb_012244_020 Hb_001133_030--Hb_012244_020 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_009486_170--Hb_003805_040 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_005701_050 Hb_005701_050 Hb_000958_050--Hb_005701_050 Hb_000958_050--Hb_000003_410 Hb_000934_210 Hb_000934_210 Hb_000958_050--Hb_000934_210 Hb_000645_130 Hb_000645_130 Hb_000958_050--Hb_000645_130 Hb_000958_050--Hb_002007_110 Hb_012055_110 Hb_012055_110 Hb_000958_050--Hb_012055_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.29635 9.71959 4.6525 4.75072 6.74621 5.27338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19676 2.59977 4.40629 6.50651 8.56414

CAGE analysis