Hb_007576_210

Information

Type -
Description -
Location Contig7576: 188549-211839
Sequence    

Annotation

kegg
ID cic:CICLE_v10010888mg
description hypothetical protein
nr
ID XP_012088092.1
description PREDICTED: protein furry homolog [Jatropha curcas]
swissprot
ID O94915
description Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2
trembl
ID V4SYV1
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010888mg PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein furry homolog-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57137: 188588-191425 , PASA_asmbl_57138: 191464-191597 , PASA_asmbl_57139: 191675-197339 , PASA_asmbl_57140: 197049-203252 , PASA_asmbl_57142: 205649-205884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_210 0.0 - - PREDICTED: protein furry homolog [Jatropha curcas]
2 Hb_009486_170 0.0565079689 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
3 Hb_014497_020 0.0654435147 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
4 Hb_001699_280 0.0694005111 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
5 Hb_007632_010 0.0708788087 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
6 Hb_002333_050 0.0714726212 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
7 Hb_003211_040 0.0717687631 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
8 Hb_000949_010 0.0739271952 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
9 Hb_011947_050 0.0739618726 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
10 Hb_001133_030 0.0775998587 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
11 Hb_188063_010 0.0781076208 - - hypothetical protein RCOM_1469330 [Ricinus communis]
12 Hb_001124_050 0.0785055768 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
13 Hb_003216_090 0.0787629798 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
14 Hb_001662_180 0.0791027606 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
15 Hb_004223_160 0.0820633618 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
16 Hb_003581_170 0.083831251 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
17 Hb_005832_010 0.0840801722 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
18 Hb_001951_170 0.0853024431 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
19 Hb_000608_230 0.0858039239 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
20 Hb_002909_120 0.086324254 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_210 Hb_007576_210 Hb_009486_170 Hb_009486_170 Hb_007576_210--Hb_009486_170 Hb_014497_020 Hb_014497_020 Hb_007576_210--Hb_014497_020 Hb_001699_280 Hb_001699_280 Hb_007576_210--Hb_001699_280 Hb_007632_010 Hb_007632_010 Hb_007576_210--Hb_007632_010 Hb_002333_050 Hb_002333_050 Hb_007576_210--Hb_002333_050 Hb_003211_040 Hb_003211_040 Hb_007576_210--Hb_003211_040 Hb_001133_030 Hb_001133_030 Hb_009486_170--Hb_001133_030 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_003895_040 Hb_003895_040 Hb_014497_020--Hb_003895_040 Hb_001124_050 Hb_001124_050 Hb_014497_020--Hb_001124_050 Hb_014497_020--Hb_003211_040 Hb_001662_180 Hb_001662_180 Hb_014497_020--Hb_001662_180 Hb_014497_020--Hb_009486_170 Hb_000105_040 Hb_000105_040 Hb_001699_280--Hb_000105_040 Hb_188063_010 Hb_188063_010 Hb_001699_280--Hb_188063_010 Hb_003581_170 Hb_003581_170 Hb_001699_280--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_002639_080 Hb_002639_080 Hb_007632_010--Hb_002639_080 Hb_000720_130 Hb_000720_130 Hb_007632_010--Hb_000720_130 Hb_000574_530 Hb_000574_530 Hb_007632_010--Hb_000574_530 Hb_007632_010--Hb_009486_170 Hb_007632_010--Hb_002333_050 Hb_002333_050--Hb_188063_010 Hb_002909_120 Hb_002909_120 Hb_002333_050--Hb_002909_120 Hb_000025_710 Hb_000025_710 Hb_002333_050--Hb_000025_710 Hb_002333_050--Hb_001699_280 Hb_002333_050--Hb_000665_230 Hb_002095_070 Hb_002095_070 Hb_003211_040--Hb_002095_070 Hb_011947_050 Hb_011947_050 Hb_003211_040--Hb_011947_050 Hb_003119_080 Hb_003119_080 Hb_003211_040--Hb_003119_080 Hb_003211_040--Hb_002909_120 Hb_003211_040--Hb_009486_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93546 20.7999 6.47902 9.87972 13.5685 10.6493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.69403 3.79924 6.04998 16.9444 15.3673

CAGE analysis