Hb_011202_020

Information

Type transcription factor
Description TF Family: FAR1
Location Contig11202: 24688-29032
Sequence    

Annotation

kegg
ID tcc:TCM_042009
description FAR1-related sequence 3 isoform 1
nr
ID XP_012066285.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVC9
description Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2
trembl
ID A0A067LFM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23846 PE=4 SV=1
Gene Ontology
ID GO:0008270
description far1-related sequence 3 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03633: 24652-24950 , PASA_asmbl_03634: 24974-36593 , PASA_asmbl_03635: 26806-33510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011202_020 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
2 Hb_001235_230 0.0461788901 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
3 Hb_005402_040 0.0534439587 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
4 Hb_003124_160 0.0587749544 - - dynamin, putative [Ricinus communis]
5 Hb_005357_260 0.0600246091 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
6 Hb_000261_030 0.0654243929 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
7 Hb_009486_170 0.0658224377 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
8 Hb_000176_130 0.0665486404 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
9 Hb_159558_010 0.0667252996 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
10 Hb_003805_040 0.0669463118 - - Sacsin [Glycine soja]
11 Hb_011689_030 0.0674318807 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
12 Hb_000665_230 0.0698815588 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
13 Hb_000037_220 0.0706745212 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
14 Hb_000176_100 0.071171364 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
15 Hb_000395_070 0.0712204681 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
16 Hb_000183_050 0.073260015 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
17 Hb_000086_690 0.0737011522 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
18 Hb_000003_100 0.0738833394 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
19 Hb_000412_010 0.0746476369 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_003216_090 0.0757353891 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011202_020 Hb_011202_020 Hb_001235_230 Hb_001235_230 Hb_011202_020--Hb_001235_230 Hb_005402_040 Hb_005402_040 Hb_011202_020--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_011202_020--Hb_003124_160 Hb_005357_260 Hb_005357_260 Hb_011202_020--Hb_005357_260 Hb_000261_030 Hb_000261_030 Hb_011202_020--Hb_000261_030 Hb_009486_170 Hb_009486_170 Hb_011202_020--Hb_009486_170 Hb_001235_230--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_001235_230--Hb_000176_130 Hb_002044_170 Hb_002044_170 Hb_001235_230--Hb_002044_170 Hb_001235_230--Hb_005357_260 Hb_000035_410 Hb_000035_410 Hb_001235_230--Hb_000035_410 Hb_027472_220 Hb_027472_220 Hb_005402_040--Hb_027472_220 Hb_005402_040--Hb_005357_260 Hb_005402_040--Hb_003124_160 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_003124_160--Hb_000176_130 Hb_004429_010 Hb_004429_010 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_003124_160--Hb_000261_030 Hb_011689_030 Hb_011689_030 Hb_005357_260--Hb_011689_030 Hb_000176_100 Hb_000176_100 Hb_005357_260--Hb_000176_100 Hb_000665_230 Hb_000665_230 Hb_005357_260--Hb_000665_230 Hb_005357_260--Hb_003124_160 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000261_030--Hb_000035_410 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040 Hb_001133_030 Hb_001133_030 Hb_009486_170--Hb_001133_030 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.33424 11.4294 5.72868 7.80793 9.38475 9.96181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.89682 3.39275 5.71501 9.74887 9.67198

CAGE analysis