Hb_000538_280

Information

Type -
Description -
Location Contig538: 315748-327975
Sequence    

Annotation

kegg
ID rcu:RCOM_0304050
description hypothetical protein
nr
ID XP_012082232.1
description PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SX39
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0304050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47703: 325541-325823 , PASA_asmbl_47705: 326376-327522 , PASA_asmbl_47706: 327525-327970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_280 0.0 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
2 Hb_003040_050 0.0657767038 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
3 Hb_000193_330 0.0679690173 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
4 Hb_009288_020 0.0697359716 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
5 Hb_001005_130 0.072808823 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
6 Hb_000059_230 0.0747699072 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
7 Hb_005701_130 0.0761508424 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
8 Hb_003417_040 0.0763301059 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
9 Hb_007763_070 0.0772230751 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
10 Hb_006663_060 0.0777370565 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
11 Hb_017469_110 0.0791726714 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
12 Hb_000731_010 0.0795486013 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
13 Hb_011174_020 0.083930147 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
14 Hb_004003_040 0.0840016026 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_073171_070 0.0840202312 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
16 Hb_006816_370 0.0845495252 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
17 Hb_006839_010 0.085226876 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
18 Hb_001377_100 0.0860569226 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
19 Hb_000684_350 0.0870113425 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
20 Hb_002600_060 0.088966729 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000538_280 Hb_000538_280 Hb_003040_050 Hb_003040_050 Hb_000538_280--Hb_003040_050 Hb_000193_330 Hb_000193_330 Hb_000538_280--Hb_000193_330 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_001005_130 Hb_001005_130 Hb_000538_280--Hb_001005_130 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230 Hb_005701_130 Hb_005701_130 Hb_000538_280--Hb_005701_130 Hb_003040_050--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_003040_050--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_003040_050--Hb_006663_060 Hb_000317_100 Hb_000317_100 Hb_003040_050--Hb_000317_100 Hb_011174_020 Hb_011174_020 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_000193_330--Hb_003040_050 Hb_000181_340 Hb_000181_340 Hb_000193_330--Hb_000181_340 Hb_001163_060 Hb_001163_060 Hb_000193_330--Hb_001163_060 Hb_004003_040 Hb_004003_040 Hb_000193_330--Hb_004003_040 Hb_007763_070 Hb_007763_070 Hb_000193_330--Hb_007763_070 Hb_009288_020--Hb_006663_060 Hb_009288_020--Hb_073171_070 Hb_006839_010 Hb_006839_010 Hb_009288_020--Hb_006839_010 Hb_009288_020--Hb_000059_230 Hb_009288_020--Hb_011174_020 Hb_001005_130--Hb_000193_330 Hb_006816_370 Hb_006816_370 Hb_001005_130--Hb_006816_370 Hb_000665_120 Hb_000665_120 Hb_001005_130--Hb_000665_120 Hb_000007_010 Hb_000007_010 Hb_001005_130--Hb_000007_010 Hb_001377_190 Hb_001377_190 Hb_001005_130--Hb_001377_190 Hb_000059_230--Hb_006839_010 Hb_000684_350 Hb_000684_350 Hb_000059_230--Hb_000684_350 Hb_001377_100 Hb_001377_100 Hb_000059_230--Hb_001377_100 Hb_012055_110 Hb_012055_110 Hb_000059_230--Hb_012055_110 Hb_000059_230--Hb_003040_050 Hb_012053_090 Hb_012053_090 Hb_005701_130--Hb_012053_090 Hb_005488_170 Hb_005488_170 Hb_005701_130--Hb_005488_170 Hb_005701_130--Hb_001377_100 Hb_001648_020 Hb_001648_020 Hb_005701_130--Hb_001648_020 Hb_002600_060 Hb_002600_060 Hb_005701_130--Hb_002600_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.86433 3.21692 2.25751 2.558 1.5497 2.07672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65652 1.23244 1.60853 2.02621 5.23036

CAGE analysis