Hb_012053_090

Information

Type transcription factor
Description TF Family: DDT
Location Contig12053: 100777-115135
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20090g
description hypothetical protein
nr
ID XP_012076177.1
description PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
swissprot
ID Q12830
description Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3
trembl
ID A0A067KE20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11240 PE=4 SV=1
Gene Ontology
ID GO:0005515
description chromodomain-helicase-dna-binding protein mi- isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06392: 110414-110677 , PASA_asmbl_06393: 112632-113038 , PASA_asmbl_06394: 113862-114582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012053_090 0.0 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
2 Hb_005701_130 0.0652505178 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
3 Hb_002328_040 0.0682459336 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
4 Hb_005488_170 0.071177047 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
5 Hb_002600_060 0.0812707222 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
6 Hb_003607_070 0.0836447876 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
7 Hb_000059_230 0.0843928778 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
8 Hb_006839_010 0.0869208441 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
9 Hb_000331_560 0.0910432471 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
10 Hb_000445_090 0.0924876839 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
11 Hb_004374_110 0.0933161088 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
12 Hb_010998_020 0.0977005129 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
13 Hb_007545_130 0.0977396406 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
14 Hb_000538_280 0.0977735266 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
15 Hb_010180_060 0.0983419999 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
16 Hb_012506_040 0.0991951714 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
17 Hb_002235_200 0.0992784353 - - pattern formation protein, putative [Ricinus communis]
18 Hb_000684_350 0.0997321465 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
19 Hb_001563_010 0.1012107123 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
20 Hb_006816_370 0.1017213251 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]

Gene co-expression network

sample Hb_012053_090 Hb_012053_090 Hb_005701_130 Hb_005701_130 Hb_012053_090--Hb_005701_130 Hb_002328_040 Hb_002328_040 Hb_012053_090--Hb_002328_040 Hb_005488_170 Hb_005488_170 Hb_012053_090--Hb_005488_170 Hb_002600_060 Hb_002600_060 Hb_012053_090--Hb_002600_060 Hb_003607_070 Hb_003607_070 Hb_012053_090--Hb_003607_070 Hb_000059_230 Hb_000059_230 Hb_012053_090--Hb_000059_230 Hb_005701_130--Hb_005488_170 Hb_000538_280 Hb_000538_280 Hb_005701_130--Hb_000538_280 Hb_001377_100 Hb_001377_100 Hb_005701_130--Hb_001377_100 Hb_001648_020 Hb_001648_020 Hb_005701_130--Hb_001648_020 Hb_005701_130--Hb_002600_060 Hb_002233_130 Hb_002233_130 Hb_002328_040--Hb_002233_130 Hb_002328_040--Hb_002600_060 Hb_026053_040 Hb_026053_040 Hb_002328_040--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_002328_040--Hb_000033_110 Hb_000331_560 Hb_000331_560 Hb_002328_040--Hb_000331_560 Hb_005488_170--Hb_002600_060 Hb_002909_120 Hb_002909_120 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_005348_010 Hb_005348_010 Hb_005488_170--Hb_005348_010 Hb_002600_060--Hb_000331_560 Hb_000925_090 Hb_000925_090 Hb_002600_060--Hb_000925_090 Hb_005211_020 Hb_005211_020 Hb_002600_060--Hb_005211_020 Hb_001133_030 Hb_001133_030 Hb_002600_060--Hb_001133_030 Hb_000083_070 Hb_000083_070 Hb_002600_060--Hb_000083_070 Hb_002235_200 Hb_002235_200 Hb_003607_070--Hb_002235_200 Hb_001498_010 Hb_001498_010 Hb_003607_070--Hb_001498_010 Hb_004374_110 Hb_004374_110 Hb_003607_070--Hb_004374_110 Hb_012098_070 Hb_012098_070 Hb_003607_070--Hb_012098_070 Hb_000365_240 Hb_000365_240 Hb_003607_070--Hb_000365_240 Hb_006839_010 Hb_006839_010 Hb_000059_230--Hb_006839_010 Hb_009288_020 Hb_009288_020 Hb_000059_230--Hb_009288_020 Hb_000684_350 Hb_000684_350 Hb_000059_230--Hb_000684_350 Hb_000059_230--Hb_001377_100 Hb_012055_110 Hb_012055_110 Hb_000059_230--Hb_012055_110 Hb_003040_050 Hb_003040_050 Hb_000059_230--Hb_003040_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97548 3.85424 2.24815 2.70578 2.93242 2.46067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14208 1.17777 2.74707 1.94722 6.70533

CAGE analysis