Hb_002235_200

Information

Type -
Description -
Location Contig2235: 140666-146930
Sequence    

Annotation

kegg
ID rcu:RCOM_0537990
description pattern formation protein, putative
nr
ID XP_002530015.1
description pattern formation protein, putative [Ricinus communis]
swissprot
ID Q42510
description ARF guanine-nucleotide exchange factor GNOM OS=Arabidopsis thaliana GN=GN PE=1 SV=1
trembl
ID B9SVJ6
description Pattern formation protein, putative OS=Ricinus communis GN=RCOM_0537990 PE=4 SV=1
Gene Ontology
ID GO:0005622
description arf guanine-nucleotide exchange factor gnom

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23216: 140775-141176 , PASA_asmbl_23217: 141444-144247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_200 0.0 - - pattern formation protein, putative [Ricinus communis]
2 Hb_004374_110 0.0458101556 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
3 Hb_003607_070 0.0720479713 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
4 Hb_006839_010 0.0768376319 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
5 Hb_140627_020 0.0786047016 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
6 Hb_000123_180 0.0838327911 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
7 Hb_003125_170 0.0864276726 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
8 Hb_001377_350 0.0877350075 - - PREDICTED: exportin-2 [Jatropha curcas]
9 Hb_001377_100 0.0884456776 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
10 Hb_012632_010 0.0902371745 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
11 Hb_005977_070 0.0922313784 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
12 Hb_002817_060 0.0928488659 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
13 Hb_005563_060 0.0935286724 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
14 Hb_004019_120 0.0936542324 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
15 Hb_000059_230 0.0939440192 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
16 Hb_001865_070 0.0947192656 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
17 Hb_000181_340 0.0953669115 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
18 Hb_005488_170 0.0955554049 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
19 Hb_013358_010 0.0962088021 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
20 Hb_002539_070 0.0974886895 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002235_200 Hb_002235_200 Hb_004374_110 Hb_004374_110 Hb_002235_200--Hb_004374_110 Hb_003607_070 Hb_003607_070 Hb_002235_200--Hb_003607_070 Hb_006839_010 Hb_006839_010 Hb_002235_200--Hb_006839_010 Hb_140627_020 Hb_140627_020 Hb_002235_200--Hb_140627_020 Hb_000123_180 Hb_000123_180 Hb_002235_200--Hb_000123_180 Hb_003125_170 Hb_003125_170 Hb_002235_200--Hb_003125_170 Hb_004374_110--Hb_006839_010 Hb_001157_240 Hb_001157_240 Hb_004374_110--Hb_001157_240 Hb_012632_010 Hb_012632_010 Hb_004374_110--Hb_012632_010 Hb_002890_130 Hb_002890_130 Hb_004374_110--Hb_002890_130 Hb_001377_100 Hb_001377_100 Hb_004374_110--Hb_001377_100 Hb_001498_010 Hb_001498_010 Hb_003607_070--Hb_001498_010 Hb_012053_090 Hb_012053_090 Hb_003607_070--Hb_012053_090 Hb_003607_070--Hb_004374_110 Hb_012098_070 Hb_012098_070 Hb_003607_070--Hb_012098_070 Hb_000365_240 Hb_000365_240 Hb_003607_070--Hb_000365_240 Hb_000059_230 Hb_000059_230 Hb_006839_010--Hb_000059_230 Hb_009288_020 Hb_009288_020 Hb_006839_010--Hb_009288_020 Hb_003040_050 Hb_003040_050 Hb_006839_010--Hb_003040_050 Hb_005215_010 Hb_005215_010 Hb_006839_010--Hb_005215_010 Hb_006839_010--Hb_001377_100 Hb_000556_220 Hb_000556_220 Hb_140627_020--Hb_000556_220 Hb_000720_130 Hb_000720_130 Hb_140627_020--Hb_000720_130 Hb_002311_100 Hb_002311_100 Hb_140627_020--Hb_002311_100 Hb_013358_010 Hb_013358_010 Hb_140627_020--Hb_013358_010 Hb_005656_040 Hb_005656_040 Hb_140627_020--Hb_005656_040 Hb_000494_050 Hb_000494_050 Hb_000123_180--Hb_000494_050 Hb_011819_020 Hb_011819_020 Hb_000123_180--Hb_011819_020 Hb_000123_180--Hb_012632_010 Hb_000123_180--Hb_002890_130 Hb_004019_120 Hb_004019_120 Hb_000123_180--Hb_004019_120 Hb_012518_070 Hb_012518_070 Hb_000123_180--Hb_012518_070 Hb_000094_070 Hb_000094_070 Hb_003125_170--Hb_000094_070 Hb_003125_170--Hb_004374_110 Hb_001635_120 Hb_001635_120 Hb_003125_170--Hb_001635_120 Hb_004787_050 Hb_004787_050 Hb_003125_170--Hb_004787_050 Hb_000181_340 Hb_000181_340 Hb_003125_170--Hb_000181_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39499 6.57038 3.67309 5.76274 4.70105 3.8149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24831 2.00279 6.57422 5.57993 8.88762

CAGE analysis