Hb_001498_010

Information

Type -
Description -
Location Contig1498: 3718-8630
Sequence    

Annotation

kegg
ID rcu:RCOM_0255030
description hypothetical protein
nr
ID XP_012090897.1
description PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
swissprot
ID P54453
description Uncharacterized protein YqeH OS=Bacillus subtilis (strain 168) GN=yqeH PE=1 SV=1
trembl
ID A0A067JDF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03254 PE=4 SV=1
Gene Ontology
ID GO:0005525
description no-associated protein chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12476: 3364-4457 , PASA_asmbl_12477: 4467-7918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001498_010 0.0 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
2 Hb_000039_150 0.0717703844 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
3 Hb_000037_190 0.0773093024 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
4 Hb_004680_120 0.0773408265 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
5 Hb_003203_030 0.0783142117 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
6 Hb_002055_040 0.0794811333 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
7 Hb_004003_040 0.0805133206 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_000346_060 0.080749268 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
9 Hb_003544_140 0.081684186 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
10 Hb_000906_100 0.0826395032 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
11 Hb_003607_070 0.0834328078 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
12 Hb_011228_010 0.0836200763 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_001999_290 0.0836825605 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
14 Hb_008959_010 0.0841691088 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006501_090 0.0846201874 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
16 Hb_004182_050 0.085163965 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
17 Hb_028912_050 0.0855463066 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
18 Hb_001279_030 0.0873040325 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
19 Hb_004225_050 0.0875106287 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
20 Hb_000352_190 0.0880538992 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]

Gene co-expression network

sample Hb_001498_010 Hb_001498_010 Hb_000039_150 Hb_000039_150 Hb_001498_010--Hb_000039_150 Hb_000037_190 Hb_000037_190 Hb_001498_010--Hb_000037_190 Hb_004680_120 Hb_004680_120 Hb_001498_010--Hb_004680_120 Hb_003203_030 Hb_003203_030 Hb_001498_010--Hb_003203_030 Hb_002055_040 Hb_002055_040 Hb_001498_010--Hb_002055_040 Hb_004003_040 Hb_004003_040 Hb_001498_010--Hb_004003_040 Hb_008959_010 Hb_008959_010 Hb_000039_150--Hb_008959_010 Hb_011228_010 Hb_011228_010 Hb_000039_150--Hb_011228_010 Hb_002769_030 Hb_002769_030 Hb_000039_150--Hb_002769_030 Hb_006501_090 Hb_006501_090 Hb_000039_150--Hb_006501_090 Hb_007426_110 Hb_007426_110 Hb_000039_150--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000039_150--Hb_007765_100 Hb_003504_030 Hb_003504_030 Hb_000037_190--Hb_003504_030 Hb_002732_040 Hb_002732_040 Hb_000037_190--Hb_002732_040 Hb_000174_270 Hb_000174_270 Hb_000037_190--Hb_000174_270 Hb_001329_140 Hb_001329_140 Hb_000037_190--Hb_001329_140 Hb_003168_110 Hb_003168_110 Hb_000037_190--Hb_003168_110 Hb_000866_460 Hb_000866_460 Hb_000037_190--Hb_000866_460 Hb_004680_120--Hb_011228_010 Hb_001279_030 Hb_001279_030 Hb_004680_120--Hb_001279_030 Hb_003912_030 Hb_003912_030 Hb_004680_120--Hb_003912_030 Hb_001005_050 Hb_001005_050 Hb_004680_120--Hb_001005_050 Hb_003544_140 Hb_003544_140 Hb_004680_120--Hb_003544_140 Hb_000331_560 Hb_000331_560 Hb_003203_030--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_003203_030--Hb_018118_010 Hb_005348_010 Hb_005348_010 Hb_003203_030--Hb_005348_010 Hb_006816_430 Hb_006816_430 Hb_003203_030--Hb_006816_430 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020 Hb_002099_080 Hb_002099_080 Hb_002055_040--Hb_002099_080 Hb_000365_240 Hb_000365_240 Hb_002055_040--Hb_000365_240 Hb_002055_040--Hb_011228_010 Hb_002055_040--Hb_000039_150 Hb_007820_010 Hb_007820_010 Hb_002055_040--Hb_007820_010 Hb_000388_090 Hb_000388_090 Hb_002055_040--Hb_000388_090 Hb_000346_060 Hb_000346_060 Hb_004003_040--Hb_000346_060 Hb_002027_080 Hb_002027_080 Hb_004003_040--Hb_002027_080 Hb_000441_090 Hb_000441_090 Hb_004003_040--Hb_000441_090 Hb_000193_330 Hb_000193_330 Hb_004003_040--Hb_000193_330 Hb_000797_040 Hb_000797_040 Hb_004003_040--Hb_000797_040 Hb_000731_010 Hb_000731_010 Hb_004003_040--Hb_000731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.56786 5.62793 4.70865 4.9163 6.39897 6.90078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72683 3.15168 7.20326 4.56006 10.2525

CAGE analysis