Hb_008959_010

Information

Type -
Description -
Location Contig8959: 28396-30772
Sequence    

Annotation

kegg
ID rcu:RCOM_1096760
description hypothetical protein
nr
ID XP_002524713.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8S8T8
description Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis thaliana GN=PCR10 PE=2 SV=1
trembl
ID B9SFE4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1096760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61752: 28412-28810 , PASA_asmbl_61753: 28814-30668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008959_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000039_150 0.0395516831 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
3 Hb_004108_160 0.0655765198 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
4 Hb_002263_020 0.0658109158 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_002769_030 0.0668107385 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
6 Hb_001304_110 0.0685415416 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
7 Hb_011228_010 0.0690418282 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001157_240 0.0705272164 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
9 Hb_003943_110 0.0712596628 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
10 Hb_006483_110 0.072345372 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
11 Hb_003153_010 0.0742782557 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
12 Hb_001999_290 0.0752192616 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
13 Hb_004109_080 0.0754563998 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
14 Hb_002218_090 0.0764234371 - - Poly(rC)-binding protein, putative [Ricinus communis]
15 Hb_007426_110 0.0764369369 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
16 Hb_000184_170 0.076518871 - - hypothetical protein RCOM_1213430 [Ricinus communis]
17 Hb_005686_090 0.0770925559 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
18 Hb_001279_030 0.0772941865 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
19 Hb_001629_030 0.0778079444 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
20 Hb_001163_060 0.0782954932 - - neutral/alkaline invertase [Manihot esculenta]

Gene co-expression network

sample Hb_008959_010 Hb_008959_010 Hb_000039_150 Hb_000039_150 Hb_008959_010--Hb_000039_150 Hb_004108_160 Hb_004108_160 Hb_008959_010--Hb_004108_160 Hb_002263_020 Hb_002263_020 Hb_008959_010--Hb_002263_020 Hb_002769_030 Hb_002769_030 Hb_008959_010--Hb_002769_030 Hb_001304_110 Hb_001304_110 Hb_008959_010--Hb_001304_110 Hb_011228_010 Hb_011228_010 Hb_008959_010--Hb_011228_010 Hb_000039_150--Hb_011228_010 Hb_000039_150--Hb_002769_030 Hb_006501_090 Hb_006501_090 Hb_000039_150--Hb_006501_090 Hb_007426_110 Hb_007426_110 Hb_000039_150--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000039_150--Hb_007765_100 Hb_003153_010 Hb_003153_010 Hb_004108_160--Hb_003153_010 Hb_000556_090 Hb_000556_090 Hb_004108_160--Hb_000556_090 Hb_001629_030 Hb_001629_030 Hb_004108_160--Hb_001629_030 Hb_001818_100 Hb_001818_100 Hb_004108_160--Hb_001818_100 Hb_008421_020 Hb_008421_020 Hb_004108_160--Hb_008421_020 Hb_000138_100 Hb_000138_100 Hb_002263_020--Hb_000138_100 Hb_001902_030 Hb_001902_030 Hb_002263_020--Hb_001902_030 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_002263_020--Hb_007426_110 Hb_003517_040 Hb_003517_040 Hb_002263_020--Hb_003517_040 Hb_004109_080 Hb_004109_080 Hb_002263_020--Hb_004109_080 Hb_002769_030--Hb_003153_010 Hb_001163_060 Hb_001163_060 Hb_002769_030--Hb_001163_060 Hb_002769_030--Hb_001629_030 Hb_002769_030--Hb_004108_160 Hb_005582_040 Hb_005582_040 Hb_001304_110--Hb_005582_040 Hb_010068_080 Hb_010068_080 Hb_001304_110--Hb_010068_080 Hb_005686_090 Hb_005686_090 Hb_001304_110--Hb_005686_090 Hb_001999_290 Hb_001999_290 Hb_001304_110--Hb_001999_290 Hb_011386_010 Hb_011386_010 Hb_001304_110--Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_001304_110--Hb_005054_110 Hb_001279_030 Hb_001279_030 Hb_011228_010--Hb_001279_030 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_002055_040 Hb_002055_040 Hb_011228_010--Hb_002055_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.50846 5.40311 6.52126 5.52813 5.62431 7.00334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.34847 5.42904 8.12041 6.33424 9.68452

CAGE analysis