Hb_001279_030

Information

Type -
Description -
Location Contig1279: 32724-41658
Sequence    

Annotation

kegg
ID cic:CICLE_v10014898mg
description hypothetical protein
nr
ID XP_012071218.1
description PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
swissprot
ID Q9LU89
description Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1
trembl
ID A0A067LPA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10184 PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 57 kda regulatory subunit b theta isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08573: 32795-41554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_030 0.0 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
2 Hb_011228_010 0.0571375029 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_005291_050 0.0655996195 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
4 Hb_006501_090 0.0663180367 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
5 Hb_000181_240 0.0689271865 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
6 Hb_000039_150 0.073662827 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
7 Hb_015807_050 0.0768957858 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
8 Hb_008959_010 0.0772941865 - - conserved hypothetical protein [Ricinus communis]
9 Hb_109980_010 0.0776102906 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
10 Hb_002263_020 0.0779437261 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
11 Hb_000184_170 0.0780841312 - - hypothetical protein RCOM_1213430 [Ricinus communis]
12 Hb_000346_060 0.0784642146 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
13 Hb_002027_080 0.0808939256 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
14 Hb_004680_120 0.082096299 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
15 Hb_000915_260 0.082199923 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
16 Hb_000441_090 0.0834349424 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
17 Hb_010294_010 0.0852188987 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
18 Hb_004108_160 0.0853407742 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
19 Hb_041290_020 0.0859212887 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
20 Hb_004109_080 0.0864086435 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001279_030 Hb_001279_030 Hb_011228_010 Hb_011228_010 Hb_001279_030--Hb_011228_010 Hb_005291_050 Hb_005291_050 Hb_001279_030--Hb_005291_050 Hb_006501_090 Hb_006501_090 Hb_001279_030--Hb_006501_090 Hb_000181_240 Hb_000181_240 Hb_001279_030--Hb_000181_240 Hb_000039_150 Hb_000039_150 Hb_001279_030--Hb_000039_150 Hb_015807_050 Hb_015807_050 Hb_001279_030--Hb_015807_050 Hb_011228_010--Hb_000039_150 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_008959_010 Hb_008959_010 Hb_011228_010--Hb_008959_010 Hb_002055_040 Hb_002055_040 Hb_011228_010--Hb_002055_040 Hb_012498_010 Hb_012498_010 Hb_005291_050--Hb_012498_010 Hb_001902_030 Hb_001902_030 Hb_005291_050--Hb_001902_030 Hb_004109_080 Hb_004109_080 Hb_005291_050--Hb_004109_080 Hb_000156_010 Hb_000156_010 Hb_005291_050--Hb_000156_010 Hb_002263_020 Hb_002263_020 Hb_005291_050--Hb_002263_020 Hb_000254_090 Hb_000254_090 Hb_005291_050--Hb_000254_090 Hb_001655_030 Hb_001655_030 Hb_006501_090--Hb_001655_030 Hb_000035_170 Hb_000035_170 Hb_006501_090--Hb_000035_170 Hb_109980_010 Hb_109980_010 Hb_006501_090--Hb_109980_010 Hb_001518_080 Hb_001518_080 Hb_006501_090--Hb_001518_080 Hb_006501_090--Hb_000039_150 Hb_000346_060 Hb_000346_060 Hb_000181_240--Hb_000346_060 Hb_000184_170 Hb_000184_170 Hb_000181_240--Hb_000184_170 Hb_002374_240 Hb_002374_240 Hb_000181_240--Hb_002374_240 Hb_000224_160 Hb_000224_160 Hb_000181_240--Hb_000224_160 Hb_000679_020 Hb_000679_020 Hb_000181_240--Hb_000679_020 Hb_000039_150--Hb_008959_010 Hb_002769_030 Hb_002769_030 Hb_000039_150--Hb_002769_030 Hb_007426_110 Hb_007426_110 Hb_000039_150--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000039_150--Hb_007765_100 Hb_000313_220 Hb_000313_220 Hb_015807_050--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_015807_050--Hb_000976_140 Hb_015807_050--Hb_109980_010 Hb_000035_470 Hb_000035_470 Hb_015807_050--Hb_000035_470 Hb_002849_130 Hb_002849_130 Hb_015807_050--Hb_002849_130 Hb_000258_070 Hb_000258_070 Hb_015807_050--Hb_000258_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.39724 4.45962 7.23622 8.12053 8.35634 8.72599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.30972 4.74352 7.72976 5.89162 10.3778

CAGE analysis