Hb_002055_040

Information

Type -
Description -
Location Contig2055: 23771-26480
Sequence    

Annotation

kegg
ID tcc:TCM_041217
description P-loop containing nucleoside triphosphate hydrolases superfamily protein
nr
ID XP_012066353.1
description PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
swissprot
ID Q9SJF1
description GTPase LSG1-2 OS=Arabidopsis thaliana GN=LSG1-2 PE=1 SV=1
trembl
ID A0A067LFS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23906 PE=4 SV=1
Gene Ontology
ID GO:0005525
description large subunit gtpase 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21200: 7545-26505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002055_040 0.0 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
2 Hb_002099_080 0.0639706376 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
3 Hb_000365_240 0.066301461 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
4 Hb_011228_010 0.0705367808 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000039_150 0.071333119 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
6 Hb_007820_010 0.0749354632 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
7 Hb_000388_090 0.075210663 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
8 Hb_001498_010 0.0794811333 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
9 Hb_000352_190 0.0809360353 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
10 Hb_008959_010 0.0822943623 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001157_240 0.0839999351 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
12 Hb_002063_020 0.0852889499 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
13 Hb_000366_040 0.0865558556 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
14 Hb_000922_030 0.0868559439 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
15 Hb_000094_070 0.0870604032 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
16 Hb_001435_030 0.0910465621 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
17 Hb_002667_050 0.0935440953 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
18 Hb_003607_070 0.0942632258 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
19 Hb_028912_050 0.0962813263 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
20 Hb_000556_090 0.0963547769 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002055_040 Hb_002055_040 Hb_002099_080 Hb_002099_080 Hb_002055_040--Hb_002099_080 Hb_000365_240 Hb_000365_240 Hb_002055_040--Hb_000365_240 Hb_011228_010 Hb_011228_010 Hb_002055_040--Hb_011228_010 Hb_000039_150 Hb_000039_150 Hb_002055_040--Hb_000039_150 Hb_007820_010 Hb_007820_010 Hb_002055_040--Hb_007820_010 Hb_000388_090 Hb_000388_090 Hb_002055_040--Hb_000388_090 Hb_002099_080--Hb_007820_010 Hb_002667_050 Hb_002667_050 Hb_002099_080--Hb_002667_050 Hb_009296_040 Hb_009296_040 Hb_002099_080--Hb_009296_040 Hb_002063_020 Hb_002063_020 Hb_002099_080--Hb_002063_020 Hb_002099_080--Hb_000388_090 Hb_001163_060 Hb_001163_060 Hb_000365_240--Hb_001163_060 Hb_000922_030 Hb_000922_030 Hb_000365_240--Hb_000922_030 Hb_001157_240 Hb_001157_240 Hb_000365_240--Hb_001157_240 Hb_002539_070 Hb_002539_070 Hb_000365_240--Hb_002539_070 Hb_004218_190 Hb_004218_190 Hb_000365_240--Hb_004218_190 Hb_001279_030 Hb_001279_030 Hb_011228_010--Hb_001279_030 Hb_011228_010--Hb_000039_150 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_008959_010 Hb_008959_010 Hb_011228_010--Hb_008959_010 Hb_000039_150--Hb_008959_010 Hb_002769_030 Hb_002769_030 Hb_000039_150--Hb_002769_030 Hb_006501_090 Hb_006501_090 Hb_000039_150--Hb_006501_090 Hb_007426_110 Hb_007426_110 Hb_000039_150--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000039_150--Hb_007765_100 Hb_003032_020 Hb_003032_020 Hb_007820_010--Hb_003032_020 Hb_000366_040 Hb_000366_040 Hb_007820_010--Hb_000366_040 Hb_000204_120 Hb_000204_120 Hb_007820_010--Hb_000204_120 Hb_000352_190 Hb_000352_190 Hb_007820_010--Hb_000352_190 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_005736_020 Hb_005736_020 Hb_000388_090--Hb_005736_020 Hb_000388_090--Hb_002063_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06649 3.28871 3.58271 3.67289 3.9682 4.72362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7081 2.6471 6.83024 5.36908 8.72368

CAGE analysis