Hb_003032_020

Information

Type -
Description -
Location Contig3032: 26950-28863
Sequence    

Annotation

kegg
ID vvi:100261119
description pentatricopeptide repeat-containing protein At5g55740, chloroplastic
nr
ID XP_012078694.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
swissprot
ID Q9FM64
description Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
trembl
ID A0A067K8B2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13262 PE=4 SV=1
Gene Ontology
ID GO:0009987
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 009_O19.ab1: 28213-28928

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003032_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
2 Hb_007820_010 0.0753106707 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
3 Hb_027472_070 0.100412117 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
4 Hb_002099_080 0.1049307101 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
5 Hb_000352_190 0.109570766 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
6 Hb_002063_020 0.1107132786 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
7 Hb_000366_040 0.111498067 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
8 Hb_000948_150 0.1123328865 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
9 Hb_004712_130 0.1130569216 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
10 Hb_000152_110 0.1132170284 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000094_070 0.1139744507 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
12 Hb_012725_060 0.1167003859 - - protein binding protein, putative [Ricinus communis]
13 Hb_002055_040 0.1178358021 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
14 Hb_165928_040 0.1200125598 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
15 Hb_012490_090 0.1213777668 - - PREDICTED: myosin-17 [Jatropha curcas]
16 Hb_002539_070 0.1257372098 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
17 Hb_000215_140 0.1283934203 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
18 Hb_012632_010 0.128780743 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
19 Hb_006816_280 0.1307319764 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
20 Hb_002316_160 0.1315510802 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]

Gene co-expression network

sample Hb_003032_020 Hb_003032_020 Hb_007820_010 Hb_007820_010 Hb_003032_020--Hb_007820_010 Hb_027472_070 Hb_027472_070 Hb_003032_020--Hb_027472_070 Hb_002099_080 Hb_002099_080 Hb_003032_020--Hb_002099_080 Hb_000352_190 Hb_000352_190 Hb_003032_020--Hb_000352_190 Hb_002063_020 Hb_002063_020 Hb_003032_020--Hb_002063_020 Hb_000366_040 Hb_000366_040 Hb_003032_020--Hb_000366_040 Hb_007820_010--Hb_002099_080 Hb_002055_040 Hb_002055_040 Hb_007820_010--Hb_002055_040 Hb_007820_010--Hb_000366_040 Hb_000204_120 Hb_000204_120 Hb_007820_010--Hb_000204_120 Hb_007820_010--Hb_000352_190 Hb_012725_060 Hb_012725_060 Hb_027472_070--Hb_012725_060 Hb_006816_280 Hb_006816_280 Hb_027472_070--Hb_006816_280 Hb_004712_130 Hb_004712_130 Hb_027472_070--Hb_004712_130 Hb_001242_130 Hb_001242_130 Hb_027472_070--Hb_001242_130 Hb_001999_090 Hb_001999_090 Hb_027472_070--Hb_001999_090 Hb_004787_050 Hb_004787_050 Hb_027472_070--Hb_004787_050 Hb_002099_080--Hb_002055_040 Hb_002667_050 Hb_002667_050 Hb_002099_080--Hb_002667_050 Hb_009296_040 Hb_009296_040 Hb_002099_080--Hb_009296_040 Hb_002099_080--Hb_002063_020 Hb_000388_090 Hb_000388_090 Hb_002099_080--Hb_000388_090 Hb_028912_050 Hb_028912_050 Hb_000352_190--Hb_028912_050 Hb_000352_190--Hb_000366_040 Hb_005686_090 Hb_005686_090 Hb_000352_190--Hb_005686_090 Hb_000352_190--Hb_002063_020 Hb_004225_050 Hb_004225_050 Hb_000352_190--Hb_004225_050 Hb_008959_010 Hb_008959_010 Hb_000352_190--Hb_008959_010 Hb_003253_040 Hb_003253_040 Hb_002063_020--Hb_003253_040 Hb_002063_020--Hb_000388_090 Hb_002063_020--Hb_000366_040 Hb_002942_100 Hb_002942_100 Hb_002063_020--Hb_002942_100 Hb_000366_040--Hb_000388_090 Hb_000366_040--Hb_004712_130 Hb_000366_040--Hb_002099_080 Hb_005736_020 Hb_005736_020 Hb_000366_040--Hb_005736_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.643549 1.28687 0.988648 1.24432 1.42802 1.19869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.545072 0.839096 3.10788 1.52886 2.24322

CAGE analysis