Hb_004218_190

Information

Type transcription factor
Description TF Family: SNF2
Location Contig4218: 185723-191682
Sequence    

Annotation

kegg
ID rcu:RCOM_1452670
description hypothetical protein
nr
ID XP_012068651.1
description PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
swissprot
ID Q9M1I1
description F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2 SV=1
trembl
ID A0A067L8T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24523 PE=4 SV=1
Gene Ontology
ID GO:0009506
description f-box protein at3g54460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41687: 185903-186906 , PASA_asmbl_41691: 188592-188891 , PASA_asmbl_41692: 189495-191480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_190 0.0 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
2 Hb_000300_470 0.0795612942 - - PREDICTED: nucleolin-like [Jatropha curcas]
3 Hb_000365_240 0.0844511014 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
4 Hb_005250_010 0.0857050309 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
5 Hb_000046_540 0.0883610467 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
6 Hb_007101_080 0.0890836391 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
7 Hb_011377_040 0.0962215453 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
8 Hb_000025_270 0.0970814951 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
9 Hb_000359_210 0.1012189053 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000922_030 0.1017480656 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
11 Hb_000033_110 0.1022639706 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
12 Hb_003475_020 0.1046162841 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
13 Hb_012330_010 0.1054075988 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
14 Hb_002631_250 0.1070669587 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
15 Hb_009178_060 0.1071309783 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_023988_030 0.1088772444 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
17 Hb_005914_040 0.1090619039 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
18 Hb_026053_040 0.1106672141 - - conserved hypothetical protein [Ricinus communis]
19 Hb_013749_050 0.1110885458 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
20 Hb_002025_250 0.111406455 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004218_190 Hb_004218_190 Hb_000300_470 Hb_000300_470 Hb_004218_190--Hb_000300_470 Hb_000365_240 Hb_000365_240 Hb_004218_190--Hb_000365_240 Hb_005250_010 Hb_005250_010 Hb_004218_190--Hb_005250_010 Hb_000046_540 Hb_000046_540 Hb_004218_190--Hb_000046_540 Hb_007101_080 Hb_007101_080 Hb_004218_190--Hb_007101_080 Hb_011377_040 Hb_011377_040 Hb_004218_190--Hb_011377_040 Hb_013405_080 Hb_013405_080 Hb_000300_470--Hb_013405_080 Hb_005260_030 Hb_005260_030 Hb_000300_470--Hb_005260_030 Hb_000237_200 Hb_000237_200 Hb_000300_470--Hb_000237_200 Hb_002774_190 Hb_002774_190 Hb_000300_470--Hb_002774_190 Hb_000300_470--Hb_000046_540 Hb_002055_040 Hb_002055_040 Hb_000365_240--Hb_002055_040 Hb_001163_060 Hb_001163_060 Hb_000365_240--Hb_001163_060 Hb_000922_030 Hb_000922_030 Hb_000365_240--Hb_000922_030 Hb_001157_240 Hb_001157_240 Hb_000365_240--Hb_001157_240 Hb_002539_070 Hb_002539_070 Hb_000365_240--Hb_002539_070 Hb_005250_010--Hb_013405_080 Hb_025477_050 Hb_025477_050 Hb_005250_010--Hb_025477_050 Hb_005914_040 Hb_005914_040 Hb_005250_010--Hb_005914_040 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_005250_010--Hb_000033_110 Hb_002078_340 Hb_002078_340 Hb_000046_540--Hb_002078_340 Hb_002025_250 Hb_002025_250 Hb_000046_540--Hb_002025_250 Hb_000078_140 Hb_000078_140 Hb_000046_540--Hb_000078_140 Hb_001195_400 Hb_001195_400 Hb_000046_540--Hb_001195_400 Hb_002769_030 Hb_002769_030 Hb_000046_540--Hb_002769_030 Hb_000025_270 Hb_000025_270 Hb_007101_080--Hb_000025_270 Hb_032920_050 Hb_032920_050 Hb_007101_080--Hb_032920_050 Hb_000613_110 Hb_000613_110 Hb_007101_080--Hb_000613_110 Hb_001824_090 Hb_001824_090 Hb_007101_080--Hb_001824_090 Hb_003994_110 Hb_003994_110 Hb_007101_080--Hb_003994_110 Hb_006970_020 Hb_006970_020 Hb_011377_040--Hb_006970_020 Hb_074197_040 Hb_074197_040 Hb_011377_040--Hb_074197_040 Hb_012330_010 Hb_012330_010 Hb_011377_040--Hb_012330_010 Hb_001301_270 Hb_001301_270 Hb_011377_040--Hb_001301_270 Hb_011377_040--Hb_000078_140 Hb_011377_040--Hb_000046_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43875 1.88026 3.2426 2.94083 2.24313 2.58707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26191 1.28736 2.80199 3.34882 7.39079

CAGE analysis