Hb_005914_040

Information

Type -
Description -
Location Contig5914: 21485-27148
Sequence    

Annotation

kegg
ID rcu:RCOM_1168260
description o-linked n-acetylglucosamine transferase, ogt, putative
nr
ID XP_002528816.1
description o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
swissprot
ID Q86TV6
description Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3
trembl
ID B9SS47
description O-linked n-acetylglucosamine transferase, ogt, putative OS=Ricinus communis GN=RCOM_1168260 PE=4 SV=1
Gene Ontology
ID GO:0016740
description tetratricopeptide repeat protein 7a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50222: 21572-21910 , PASA_asmbl_50223: 21953-27148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_040 0.0 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
2 Hb_005571_010 0.0718307551 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
3 Hb_006846_080 0.0754932148 - - calnexin, putative [Ricinus communis]
4 Hb_023988_030 0.0823658747 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
5 Hb_009178_060 0.0828692678 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_005250_010 0.083298678 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
7 Hb_000862_100 0.0862865313 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
8 Hb_022250_010 0.0892348568 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
9 Hb_048476_080 0.0944264434 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
10 Hb_013749_050 0.0957076618 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
11 Hb_001421_090 0.0967637945 - - hypothetical protein RCOM_1278080 [Ricinus communis]
12 Hb_002874_110 0.0969060991 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
13 Hb_000803_320 0.0974668661 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
14 Hb_001998_220 0.0976391403 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
15 Hb_000025_500 0.0982132404 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_015884_020 0.1001446796 - - PREDICTED: protein PIR [Jatropha curcas]
17 Hb_004225_040 0.1006194098 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
18 Hb_000684_350 0.100631443 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
19 Hb_009288_020 0.1013403726 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
20 Hb_006970_020 0.1020014274 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]

Gene co-expression network

sample Hb_005914_040 Hb_005914_040 Hb_005571_010 Hb_005571_010 Hb_005914_040--Hb_005571_010 Hb_006846_080 Hb_006846_080 Hb_005914_040--Hb_006846_080 Hb_023988_030 Hb_023988_030 Hb_005914_040--Hb_023988_030 Hb_009178_060 Hb_009178_060 Hb_005914_040--Hb_009178_060 Hb_005250_010 Hb_005250_010 Hb_005914_040--Hb_005250_010 Hb_000862_100 Hb_000862_100 Hb_005914_040--Hb_000862_100 Hb_005571_010--Hb_023988_030 Hb_002150_020 Hb_002150_020 Hb_005571_010--Hb_002150_020 Hb_106890_010 Hb_106890_010 Hb_005571_010--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_005571_010--Hb_003355_010 Hb_055690_010 Hb_055690_010 Hb_005571_010--Hb_055690_010 Hb_000025_500 Hb_000025_500 Hb_006846_080--Hb_000025_500 Hb_002399_020 Hb_002399_020 Hb_006846_080--Hb_002399_020 Hb_010757_030 Hb_010757_030 Hb_006846_080--Hb_010757_030 Hb_003632_030 Hb_003632_030 Hb_006846_080--Hb_003632_030 Hb_004225_040 Hb_004225_040 Hb_006846_080--Hb_004225_040 Hb_023988_030--Hb_055690_010 Hb_023988_030--Hb_106890_010 Hb_001677_220 Hb_001677_220 Hb_023988_030--Hb_001677_220 Hb_011364_020 Hb_011364_020 Hb_023988_030--Hb_011364_020 Hb_005511_150 Hb_005511_150 Hb_009178_060--Hb_005511_150 Hb_002232_390 Hb_002232_390 Hb_009178_060--Hb_002232_390 Hb_000803_320 Hb_000803_320 Hb_009178_060--Hb_000803_320 Hb_009178_060--Hb_011364_020 Hb_009178_060--Hb_005250_010 Hb_013405_080 Hb_013405_080 Hb_005250_010--Hb_013405_080 Hb_025477_050 Hb_025477_050 Hb_005250_010--Hb_025477_050 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_005250_010--Hb_000033_110 Hb_004705_160 Hb_004705_160 Hb_000862_100--Hb_004705_160 Hb_006970_020 Hb_006970_020 Hb_000862_100--Hb_006970_020 Hb_068079_010 Hb_068079_010 Hb_000862_100--Hb_068079_010 Hb_000815_300 Hb_000815_300 Hb_000862_100--Hb_000815_300 Hb_001159_060 Hb_001159_060 Hb_000862_100--Hb_001159_060 Hb_000406_210 Hb_000406_210 Hb_000862_100--Hb_000406_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91249 4.69391 4.84638 6.92655 3.80903 3.11116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82487 1.86327 2.56378 4.80705 11.1085

CAGE analysis