Hb_000025_500

Information

Type -
Description -
Location Contig25: 491061-503027
Sequence    

Annotation

kegg
ID rcu:RCOM_0833820
description Ran GTPase binding protein, putative
nr
ID XP_002527043.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9SM24
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0833820 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_500 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_000167_120 0.0829618197 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
3 Hb_001221_300 0.0836847093 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
4 Hb_052946_010 0.0848994351 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
5 Hb_001998_150 0.086970575 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
6 Hb_001341_010 0.0886339416 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
7 Hb_004041_030 0.0923024284 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
8 Hb_013399_090 0.0940901565 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
9 Hb_006846_080 0.0946652801 - - calnexin, putative [Ricinus communis]
10 Hb_002805_090 0.0966785361 - - Ran GTPase binding protein, putative [Ricinus communis]
11 Hb_000731_290 0.0975392609 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_005914_040 0.0982132404 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
13 Hb_001998_220 0.0985094524 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
14 Hb_000120_860 0.099119763 - - nucellin, putative [Ricinus communis]
15 Hb_002150_020 0.0997663117 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000066_040 0.1009891739 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
17 Hb_000186_080 0.1016436763 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
18 Hb_005571_010 0.1025086796 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
19 Hb_005116_140 0.1026025857 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
20 Hb_013749_050 0.1029734928 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_500 Hb_000025_500 Hb_000167_120 Hb_000167_120 Hb_000025_500--Hb_000167_120 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_004041_030 Hb_004041_030 Hb_000025_500--Hb_004041_030 Hb_005181_050 Hb_005181_050 Hb_000167_120--Hb_005181_050 Hb_000844_050 Hb_000844_050 Hb_000167_120--Hb_000844_050 Hb_003124_270 Hb_003124_270 Hb_000167_120--Hb_003124_270 Hb_000167_120--Hb_001998_150 Hb_003680_020 Hb_003680_020 Hb_000167_120--Hb_003680_020 Hb_000369_080 Hb_000369_080 Hb_001221_300--Hb_000369_080 Hb_001221_300--Hb_004041_030 Hb_001439_070 Hb_001439_070 Hb_001221_300--Hb_001439_070 Hb_000376_210 Hb_000376_210 Hb_001221_300--Hb_000376_210 Hb_021079_020 Hb_021079_020 Hb_001221_300--Hb_021079_020 Hb_000731_290 Hb_000731_290 Hb_052946_010--Hb_000731_290 Hb_001080_030 Hb_001080_030 Hb_052946_010--Hb_001080_030 Hb_052946_010--Hb_004041_030 Hb_008511_140 Hb_008511_140 Hb_052946_010--Hb_008511_140 Hb_003029_140 Hb_003029_140 Hb_052946_010--Hb_003029_140 Hb_000809_250 Hb_000809_250 Hb_001998_150--Hb_000809_250 Hb_001998_150--Hb_000844_050 Hb_007313_040 Hb_007313_040 Hb_001998_150--Hb_007313_040 Hb_048476_080 Hb_048476_080 Hb_001998_150--Hb_048476_080 Hb_001341_010--Hb_005181_050 Hb_001341_010--Hb_000167_120 Hb_001366_270 Hb_001366_270 Hb_001341_010--Hb_001366_270 Hb_000186_080 Hb_000186_080 Hb_001341_010--Hb_000186_080 Hb_003490_050 Hb_003490_050 Hb_001341_010--Hb_003490_050 Hb_002150_020 Hb_002150_020 Hb_004041_030--Hb_002150_020 Hb_005305_020 Hb_005305_020 Hb_004041_030--Hb_005305_020 Hb_001405_080 Hb_001405_080 Hb_004041_030--Hb_001405_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12273 4.94082 3.32183 5.15598 1.67363 1.8434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.34914 1.0723 1.95184 3.76312 10.6367

CAGE analysis