Hb_000186_080

Information

Type -
Description -
Location Contig186: 184523-187761
Sequence    

Annotation

kegg
ID bdi:100824212
description tetratricopeptide repeat protein 1-like
nr
ID XP_012435407.1
description PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
swissprot
ID P07213
description Mitochondrial import receptor subunit TOM70 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOM70 PE=1 SV=2
trembl
ID A0A0A9E7B3
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18227: 96692-187184 , PASA_asmbl_18228: 96692-187184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_080 0.0 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
2 Hb_005701_130 0.0892220054 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
3 Hb_001408_120 0.0916902143 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_001341_010 0.0934762557 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
5 Hb_002016_050 0.094516578 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
6 Hb_013749_050 0.0947165266 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
7 Hb_002973_110 0.0952044504 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000025_500 0.1016436763 - - Ran GTPase binding protein, putative [Ricinus communis]
9 Hb_015778_060 0.1021370433 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
10 Hb_007545_130 0.1036091949 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
11 Hb_001726_100 0.1040139658 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
12 Hb_000154_130 0.1041146654 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
13 Hb_005211_020 0.1046236218 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
14 Hb_001998_150 0.10509526 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
15 Hb_000367_020 0.1072876542 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
16 Hb_000167_120 0.107790265 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
17 Hb_000538_280 0.107868976 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
18 Hb_003849_280 0.1090673922 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
19 Hb_000844_050 0.109773522 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
20 Hb_000110_270 0.1122613442 - - prp4, putative [Ricinus communis]

Gene co-expression network

sample Hb_000186_080 Hb_000186_080 Hb_005701_130 Hb_005701_130 Hb_000186_080--Hb_005701_130 Hb_001408_120 Hb_001408_120 Hb_000186_080--Hb_001408_120 Hb_001341_010 Hb_001341_010 Hb_000186_080--Hb_001341_010 Hb_002016_050 Hb_002016_050 Hb_000186_080--Hb_002016_050 Hb_013749_050 Hb_013749_050 Hb_000186_080--Hb_013749_050 Hb_002973_110 Hb_002973_110 Hb_000186_080--Hb_002973_110 Hb_012053_090 Hb_012053_090 Hb_005701_130--Hb_012053_090 Hb_005488_170 Hb_005488_170 Hb_005701_130--Hb_005488_170 Hb_000538_280 Hb_000538_280 Hb_005701_130--Hb_000538_280 Hb_001377_100 Hb_001377_100 Hb_005701_130--Hb_001377_100 Hb_001648_020 Hb_001648_020 Hb_005701_130--Hb_001648_020 Hb_002600_060 Hb_002600_060 Hb_005701_130--Hb_002600_060 Hb_013399_090 Hb_013399_090 Hb_001408_120--Hb_013399_090 Hb_000008_410 Hb_000008_410 Hb_001408_120--Hb_000008_410 Hb_001408_120--Hb_001341_010 Hb_052946_010 Hb_052946_010 Hb_001408_120--Hb_052946_010 Hb_001726_100 Hb_001726_100 Hb_001408_120--Hb_001726_100 Hb_005181_050 Hb_005181_050 Hb_001341_010--Hb_005181_050 Hb_000167_120 Hb_000167_120 Hb_001341_010--Hb_000167_120 Hb_000025_500 Hb_000025_500 Hb_001341_010--Hb_000025_500 Hb_001366_270 Hb_001366_270 Hb_001341_010--Hb_001366_270 Hb_003490_050 Hb_003490_050 Hb_001341_010--Hb_003490_050 Hb_002986_070 Hb_002986_070 Hb_002016_050--Hb_002986_070 Hb_015778_060 Hb_015778_060 Hb_002016_050--Hb_015778_060 Hb_007545_130 Hb_007545_130 Hb_002016_050--Hb_007545_130 Hb_004785_070 Hb_004785_070 Hb_002016_050--Hb_004785_070 Hb_000997_140 Hb_000997_140 Hb_002016_050--Hb_000997_140 Hb_068804_090 Hb_068804_090 Hb_013749_050--Hb_068804_090 Hb_013749_050--Hb_002973_110 Hb_004111_030 Hb_004111_030 Hb_013749_050--Hb_004111_030 Hb_030736_040 Hb_030736_040 Hb_013749_050--Hb_030736_040 Hb_000243_120 Hb_000243_120 Hb_013749_050--Hb_000243_120 Hb_000617_250 Hb_000617_250 Hb_013749_050--Hb_000617_250 Hb_013459_020 Hb_013459_020 Hb_002973_110--Hb_013459_020 Hb_005211_020 Hb_005211_020 Hb_002973_110--Hb_005211_020 Hb_007012_030 Hb_007012_030 Hb_002973_110--Hb_007012_030 Hb_001472_160 Hb_001472_160 Hb_002973_110--Hb_001472_160 Hb_002600_070 Hb_002600_070 Hb_002973_110--Hb_002600_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65619 3.71844 2.10838 2.23826 1.40053 1.42243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.875638 0.970262 1.44726 2.44597 7.1121

CAGE analysis