Hb_001341_010

Information

Type -
Description -
Location Contig1341: 3967-9259
Sequence    

Annotation

kegg
ID rcu:RCOM_1398950
description ATP binding protein, putative (EC:6.3.4.16)
nr
ID XP_012064882.1
description PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
swissprot
ID Q42601
description Carbamoyl-phosphate synthase large chain, chloroplastic OS=Arabidopsis thaliana GN=CARB PE=1 SV=1
trembl
ID B9SK20
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1398950 PE=3 SV=1
Gene Ontology
ID GO:0005951
description carbamoyl-phosphate synthase large chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09681: 3986-9380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_010 0.0 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
2 Hb_005181_050 0.0850260563 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
3 Hb_000167_120 0.087878315 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
4 Hb_000025_500 0.0886339416 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_001366_270 0.0929898904 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
6 Hb_000186_080 0.0934762557 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
7 Hb_003490_050 0.0943800568 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
8 Hb_000484_010 0.0993084576 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
9 Hb_000731_290 0.1037646003 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_000492_080 0.104576878 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
11 Hb_000809_250 0.1049335659 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
12 Hb_013399_090 0.1068811486 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
13 Hb_001408_120 0.1077993541 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_000844_050 0.1080023793 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
15 Hb_005914_040 0.108285303 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
16 Hb_000022_160 0.1101209183 - - -
17 Hb_015292_060 0.1101399876 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
18 Hb_013749_050 0.1108581058 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
19 Hb_003124_270 0.1124982266 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
20 Hb_052946_010 0.112595824 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]

Gene co-expression network

sample Hb_001341_010 Hb_001341_010 Hb_005181_050 Hb_005181_050 Hb_001341_010--Hb_005181_050 Hb_000167_120 Hb_000167_120 Hb_001341_010--Hb_000167_120 Hb_000025_500 Hb_000025_500 Hb_001341_010--Hb_000025_500 Hb_001366_270 Hb_001366_270 Hb_001341_010--Hb_001366_270 Hb_000186_080 Hb_000186_080 Hb_001341_010--Hb_000186_080 Hb_003490_050 Hb_003490_050 Hb_001341_010--Hb_003490_050 Hb_003124_270 Hb_003124_270 Hb_005181_050--Hb_003124_270 Hb_005181_050--Hb_000167_120 Hb_003680_020 Hb_003680_020 Hb_005181_050--Hb_003680_020 Hb_000125_180 Hb_000125_180 Hb_005181_050--Hb_000125_180 Hb_000844_050 Hb_000844_050 Hb_005181_050--Hb_000844_050 Hb_000809_250 Hb_000809_250 Hb_005181_050--Hb_000809_250 Hb_000167_120--Hb_000844_050 Hb_000167_120--Hb_003124_270 Hb_000167_120--Hb_000025_500 Hb_001998_150 Hb_001998_150 Hb_000167_120--Hb_001998_150 Hb_000167_120--Hb_003680_020 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_000025_500--Hb_001998_150 Hb_004041_030 Hb_004041_030 Hb_000025_500--Hb_004041_030 Hb_005000_090 Hb_005000_090 Hb_001366_270--Hb_005000_090 Hb_001366_270--Hb_005181_050 Hb_001366_270--Hb_000809_250 Hb_001511_180 Hb_001511_180 Hb_001366_270--Hb_001511_180 Hb_000540_100 Hb_000540_100 Hb_001366_270--Hb_000540_100 Hb_005701_130 Hb_005701_130 Hb_000186_080--Hb_005701_130 Hb_001408_120 Hb_001408_120 Hb_000186_080--Hb_001408_120 Hb_002016_050 Hb_002016_050 Hb_000186_080--Hb_002016_050 Hb_013749_050 Hb_013749_050 Hb_000186_080--Hb_013749_050 Hb_002973_110 Hb_002973_110 Hb_000186_080--Hb_002973_110 Hb_002232_490 Hb_002232_490 Hb_003490_050--Hb_002232_490 Hb_000922_260 Hb_000922_260 Hb_003490_050--Hb_000922_260 Hb_003490_060 Hb_003490_060 Hb_003490_050--Hb_003490_060 Hb_000109_260 Hb_000109_260 Hb_003490_050--Hb_000109_260 Hb_005571_010 Hb_005571_010 Hb_003490_050--Hb_005571_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96001 14.4758 9.49393 13.8435 4.93083 8.36911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09533 3.02386 6.40984 15.9937 29.0643

CAGE analysis