Hb_001221_300

Information

Type -
Description -
Location Contig1221: 218473-220467
Sequence    

Annotation

kegg
ID rcu:RCOM_1506000
description acetolactate synthase, putative (EC:2.2.1.6)
nr
ID XP_012090695.1
description PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
swissprot
ID P27818
description Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1
trembl
ID A0A067JIF9
description Acetolactate synthase OS=Jatropha curcas GN=JCGZ_26444 PE=3 SV=1
Gene Ontology
ID GO:0009570
description acetolactate synthase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 045_J15.ab1: 220258-220524

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_300 0.0 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
2 Hb_000369_080 0.071276212 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
3 Hb_000025_500 0.0836847093 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_004041_030 0.088762101 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
5 Hb_001439_070 0.0917174329 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_000376_210 0.0935204525 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
7 Hb_021079_020 0.0936662167 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
8 Hb_000665_200 0.0937900105 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_000066_040 0.1053218401 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
10 Hb_000167_120 0.1053892772 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
11 Hb_001307_100 0.1058185344 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_001969_130 0.1064957718 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
13 Hb_068804_090 0.1065585062 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
14 Hb_013399_090 0.1071412647 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
15 Hb_002150_020 0.1075318508 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_004052_110 0.1082853947 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
17 Hb_001865_100 0.1087046614 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
18 Hb_004994_350 0.1087806858 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
19 Hb_000510_190 0.109740257 - - glutathione reductase [Hevea brasiliensis]
20 Hb_002805_090 0.1110208475 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001221_300 Hb_001221_300 Hb_000369_080 Hb_000369_080 Hb_001221_300--Hb_000369_080 Hb_000025_500 Hb_000025_500 Hb_001221_300--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_001221_300--Hb_004041_030 Hb_001439_070 Hb_001439_070 Hb_001221_300--Hb_001439_070 Hb_000376_210 Hb_000376_210 Hb_001221_300--Hb_000376_210 Hb_021079_020 Hb_021079_020 Hb_001221_300--Hb_021079_020 Hb_000340_360 Hb_000340_360 Hb_000369_080--Hb_000340_360 Hb_003581_130 Hb_003581_130 Hb_000369_080--Hb_003581_130 Hb_013399_090 Hb_013399_090 Hb_000369_080--Hb_013399_090 Hb_014006_010 Hb_014006_010 Hb_000369_080--Hb_014006_010 Hb_003124_270 Hb_003124_270 Hb_000369_080--Hb_003124_270 Hb_000167_120 Hb_000167_120 Hb_000025_500--Hb_000167_120 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_000025_500--Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_004041_030--Hb_002150_020 Hb_005305_020 Hb_005305_020 Hb_004041_030--Hb_005305_020 Hb_004041_030--Hb_052946_010 Hb_001405_080 Hb_001405_080 Hb_004041_030--Hb_001405_080 Hb_001998_210 Hb_001998_210 Hb_001439_070--Hb_001998_210 Hb_000617_250 Hb_000617_250 Hb_001439_070--Hb_000617_250 Hb_003661_010 Hb_003661_010 Hb_001439_070--Hb_003661_010 Hb_001059_060 Hb_001059_060 Hb_001439_070--Hb_001059_060 Hb_004052_110 Hb_004052_110 Hb_001439_070--Hb_004052_110 Hb_001421_090 Hb_001421_090 Hb_001439_070--Hb_001421_090 Hb_006916_050 Hb_006916_050 Hb_000376_210--Hb_006916_050 Hb_000376_210--Hb_000617_250 Hb_000376_210--Hb_021079_020 Hb_004629_030 Hb_004629_030 Hb_000376_210--Hb_004629_030 Hb_000762_110 Hb_000762_110 Hb_000376_210--Hb_000762_110 Hb_068804_090 Hb_068804_090 Hb_000376_210--Hb_068804_090 Hb_021079_020--Hb_013399_090 Hb_021079_020--Hb_000340_360 Hb_015778_060 Hb_015778_060 Hb_021079_020--Hb_015778_060 Hb_000170_160 Hb_000170_160 Hb_021079_020--Hb_000170_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.875 85.0693 76.4428 75.6506 14.8407 29.8062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8786 20.7805 27.3497 47.4803 154.281

CAGE analysis