Hb_004629_030

Information

Type -
Description -
Location Contig4629: 46394-50863
Sequence    

Annotation

kegg
ID rcu:RCOM_0257150
description Protein sufD, putative
nr
ID AIU41657.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9LQK7
description Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1 SV=1
trembl
ID A0A097P9T4
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI7 PE=2 SV=1
Gene Ontology
ID GO:0009570
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43838: 46034-50956 , PASA_asmbl_43839: 46022-47821
cDNA
(Sanger)
(ID:Location)		 012_D13.ab1: 46024-46978

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004629_030 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000482_050 0.0652748175 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
3 Hb_068804_090 0.0679907006 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
4 Hb_000748_090 0.0764394383 - - glucose inhibited division protein A, putative [Ricinus communis]
5 Hb_007012_030 0.0790085325 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
6 Hb_000358_040 0.0830280694 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
7 Hb_000617_250 0.0849540438 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
8 Hb_025194_090 0.0859559635 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
9 Hb_002928_030 0.0860945634 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
10 Hb_002828_060 0.0874336828 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
11 Hb_000376_210 0.0874369748 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
12 Hb_018043_020 0.0883701579 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
13 Hb_000510_190 0.0906003412 - - glutathione reductase [Hevea brasiliensis]
14 Hb_002600_070 0.0909806123 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
15 Hb_001472_160 0.0920303735 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
16 Hb_013749_050 0.0925335163 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
17 Hb_000579_040 0.0937481209 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
18 Hb_138585_030 0.0946245899 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
19 Hb_000260_710 0.0958547922 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
20 Hb_002973_110 0.0972857822 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_004629_030 Hb_004629_030 Hb_000482_050 Hb_000482_050 Hb_004629_030--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_004629_030--Hb_068804_090 Hb_000748_090 Hb_000748_090 Hb_004629_030--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_004629_030--Hb_007012_030 Hb_000358_040 Hb_000358_040 Hb_004629_030--Hb_000358_040 Hb_000617_250 Hb_000617_250 Hb_004629_030--Hb_000617_250 Hb_002828_060 Hb_002828_060 Hb_000482_050--Hb_002828_060 Hb_001396_020 Hb_001396_020 Hb_000482_050--Hb_001396_020 Hb_002600_070 Hb_002600_070 Hb_000482_050--Hb_002600_070 Hb_000482_050--Hb_007012_030 Hb_000482_050--Hb_000748_090 Hb_068804_090--Hb_000748_090 Hb_013749_050 Hb_013749_050 Hb_068804_090--Hb_013749_050 Hb_068804_090--Hb_007012_030 Hb_000243_120 Hb_000243_120 Hb_068804_090--Hb_000243_120 Hb_030736_040 Hb_030736_040 Hb_068804_090--Hb_030736_040 Hb_000748_090--Hb_007012_030 Hb_000748_090--Hb_002600_070 Hb_004324_360 Hb_004324_360 Hb_000748_090--Hb_004324_360 Hb_021596_020 Hb_021596_020 Hb_000748_090--Hb_021596_020 Hb_007012_030--Hb_002600_070 Hb_007012_030--Hb_000617_250 Hb_007012_030--Hb_004324_360 Hb_002928_030 Hb_002928_030 Hb_000358_040--Hb_002928_030 Hb_001649_030 Hb_001649_030 Hb_000358_040--Hb_001649_030 Hb_000260_710 Hb_000260_710 Hb_000358_040--Hb_000260_710 Hb_000358_040--Hb_000482_050 Hb_003376_390 Hb_003376_390 Hb_000358_040--Hb_003376_390 Hb_025194_050 Hb_025194_050 Hb_000617_250--Hb_025194_050 Hb_001421_090 Hb_001421_090 Hb_000617_250--Hb_001421_090 Hb_000376_210 Hb_000376_210 Hb_000617_250--Hb_000376_210 Hb_000617_250--Hb_000482_050 Hb_000617_250--Hb_068804_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.48502 16.7796 30.8783 16.2611 7.49699 8.67622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.00591 7.27668 5.99622 14.3546 44.4312

CAGE analysis