Hb_013749_050

Information

Type -
Description -
Location Contig13749: 33004-53001
Sequence    

Annotation

kegg
ID bvg:104890457
description uncharacterized LOC104890457
nr
ID XP_012089378.1
description PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
swissprot
ID P72991
description ATP-dependent zinc metalloprotease FtsH 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ftsH3 PE=1 SV=1
trembl
ID A0A0B2Q054
description ATP-dependent zinc metalloprotease FtsH 3 OS=Glycine soja GN=glysoja_038124 PE=4 SV=1
Gene Ontology
ID GO:0004222
description metalloprotease m41

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10335: 33019-50972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013749_050 0.0 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
2 Hb_068804_090 0.0541082933 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
3 Hb_002973_110 0.0792076952 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_004111_030 0.0813945208 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
5 Hb_030736_040 0.0833132183 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
6 Hb_000243_120 0.0845678855 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
7 Hb_000617_250 0.0855247393 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
8 Hb_005571_010 0.0862582683 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
9 Hb_007012_030 0.086330731 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
10 Hb_012022_060 0.0907960054 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
11 Hb_004629_030 0.0925335163 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_000748_090 0.092810118 - - glucose inhibited division protein A, putative [Ricinus communis]
13 Hb_000186_080 0.0947165266 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
14 Hb_005914_040 0.0957076618 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
15 Hb_001472_160 0.0958029334 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
16 Hb_000300_470 0.0976473532 - - PREDICTED: nucleolin-like [Jatropha curcas]
17 Hb_048476_080 0.0983162615 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
18 Hb_106890_010 0.1002830639 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
19 Hb_005260_030 0.100342495 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
20 Hb_000844_050 0.1005360978 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]

Gene co-expression network

sample Hb_013749_050 Hb_013749_050 Hb_068804_090 Hb_068804_090 Hb_013749_050--Hb_068804_090 Hb_002973_110 Hb_002973_110 Hb_013749_050--Hb_002973_110 Hb_004111_030 Hb_004111_030 Hb_013749_050--Hb_004111_030 Hb_030736_040 Hb_030736_040 Hb_013749_050--Hb_030736_040 Hb_000243_120 Hb_000243_120 Hb_013749_050--Hb_000243_120 Hb_000617_250 Hb_000617_250 Hb_013749_050--Hb_000617_250 Hb_000748_090 Hb_000748_090 Hb_068804_090--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_068804_090--Hb_007012_030 Hb_068804_090--Hb_000243_120 Hb_068804_090--Hb_030736_040 Hb_004629_030 Hb_004629_030 Hb_068804_090--Hb_004629_030 Hb_013459_020 Hb_013459_020 Hb_002973_110--Hb_013459_020 Hb_005211_020 Hb_005211_020 Hb_002973_110--Hb_005211_020 Hb_002973_110--Hb_007012_030 Hb_001472_160 Hb_001472_160 Hb_002973_110--Hb_001472_160 Hb_002600_070 Hb_002600_070 Hb_002973_110--Hb_002600_070 Hb_005571_010 Hb_005571_010 Hb_004111_030--Hb_005571_010 Hb_001890_010 Hb_001890_010 Hb_004111_030--Hb_001890_010 Hb_001105_100 Hb_001105_100 Hb_004111_030--Hb_001105_100 Hb_002150_020 Hb_002150_020 Hb_004111_030--Hb_002150_020 Hb_003355_010 Hb_003355_010 Hb_004111_030--Hb_003355_010 Hb_001117_110 Hb_001117_110 Hb_030736_040--Hb_001117_110 Hb_106890_010 Hb_106890_010 Hb_030736_040--Hb_106890_010 Hb_055690_010 Hb_055690_010 Hb_030736_040--Hb_055690_010 Hb_030736_040--Hb_003355_010 Hb_008705_020 Hb_008705_020 Hb_030736_040--Hb_008705_020 Hb_009158_060 Hb_009158_060 Hb_000243_120--Hb_009158_060 Hb_000243_120--Hb_030736_040 Hb_000243_120--Hb_106890_010 Hb_000243_120--Hb_003355_010 Hb_000617_250--Hb_007012_030 Hb_025194_050 Hb_025194_050 Hb_000617_250--Hb_025194_050 Hb_001421_090 Hb_001421_090 Hb_000617_250--Hb_001421_090 Hb_000376_210 Hb_000376_210 Hb_000617_250--Hb_000376_210 Hb_000482_050 Hb_000482_050 Hb_000617_250--Hb_000482_050 Hb_000617_250--Hb_068804_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78295 12.325 14.5175 10.219 6.21579 5.79902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.26265 4.58301 6.821 12.3703 28.4419

CAGE analysis