Hb_004111_030

Information

Type -
Description -
Location Contig4111: 45674-80366
Sequence    

Annotation

kegg
ID rcu:RCOM_0692980
description DNA gyrase subunit B, putative (EC:5.99.1.3)
nr
ID XP_012082559.1
description PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
swissprot
ID Q5YLB4
description DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1
trembl
ID A0A067JZH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16641 PE=3 SV=1
Gene Ontology
ID GO:0005694
description dna gyrase subunit chloroplastic mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40693: 45740-80223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004111_030 0.0 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
2 Hb_013749_050 0.0813945208 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
3 Hb_005571_010 0.0824915488 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
4 Hb_001890_010 0.0860681111 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_001105_100 0.0866087531 - - PREDICTED: cathepsin B [Jatropha curcas]
6 Hb_002150_020 0.0873547503 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_003355_010 0.0884629278 - - Heat shock 70 kDa protein, putative [Ricinus communis]
8 Hb_068804_090 0.0898166773 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
9 Hb_030736_040 0.0906390281 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
10 Hb_106890_010 0.0931365976 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
11 Hb_001405_080 0.0938000952 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
12 Hb_001425_010 0.0981281195 - - sugar transporter, putative [Ricinus communis]
13 Hb_000496_130 0.099674713 - - PREDICTED: fructokinase-1 [Jatropha curcas]
14 Hb_004629_030 0.1002829177 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_004041_030 0.1008591608 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
16 Hb_055690_010 0.1021070795 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
17 Hb_001143_100 0.1039662981 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
18 Hb_000510_190 0.104798595 - - glutathione reductase [Hevea brasiliensis]
19 Hb_003440_020 0.1048253141 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_003549_050 0.1048604505 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004111_030 Hb_004111_030 Hb_013749_050 Hb_013749_050 Hb_004111_030--Hb_013749_050 Hb_005571_010 Hb_005571_010 Hb_004111_030--Hb_005571_010 Hb_001890_010 Hb_001890_010 Hb_004111_030--Hb_001890_010 Hb_001105_100 Hb_001105_100 Hb_004111_030--Hb_001105_100 Hb_002150_020 Hb_002150_020 Hb_004111_030--Hb_002150_020 Hb_003355_010 Hb_003355_010 Hb_004111_030--Hb_003355_010 Hb_068804_090 Hb_068804_090 Hb_013749_050--Hb_068804_090 Hb_002973_110 Hb_002973_110 Hb_013749_050--Hb_002973_110 Hb_030736_040 Hb_030736_040 Hb_013749_050--Hb_030736_040 Hb_000243_120 Hb_000243_120 Hb_013749_050--Hb_000243_120 Hb_000617_250 Hb_000617_250 Hb_013749_050--Hb_000617_250 Hb_023988_030 Hb_023988_030 Hb_005571_010--Hb_023988_030 Hb_005571_010--Hb_002150_020 Hb_106890_010 Hb_106890_010 Hb_005571_010--Hb_106890_010 Hb_005571_010--Hb_003355_010 Hb_005914_040 Hb_005914_040 Hb_005571_010--Hb_005914_040 Hb_055690_010 Hb_055690_010 Hb_005571_010--Hb_055690_010 Hb_000640_260 Hb_000640_260 Hb_001890_010--Hb_000640_260 Hb_003124_120 Hb_003124_120 Hb_001890_010--Hb_003124_120 Hb_018043_020 Hb_018043_020 Hb_001890_010--Hb_018043_020 Hb_000934_020 Hb_000934_020 Hb_001890_010--Hb_000934_020 Hb_159809_090 Hb_159809_090 Hb_001890_010--Hb_159809_090 Hb_000909_080 Hb_000909_080 Hb_001105_100--Hb_000909_080 Hb_001105_100--Hb_055690_010 Hb_003440_020 Hb_003440_020 Hb_001105_100--Hb_003440_020 Hb_000167_120 Hb_000167_120 Hb_001105_100--Hb_000167_120 Hb_001571_060 Hb_001571_060 Hb_001105_100--Hb_001571_060 Hb_004041_030 Hb_004041_030 Hb_002150_020--Hb_004041_030 Hb_002150_020--Hb_055690_010 Hb_001009_260 Hb_001009_260 Hb_002150_020--Hb_001009_260 Hb_032631_070 Hb_032631_070 Hb_002150_020--Hb_032631_070 Hb_005305_020 Hb_005305_020 Hb_002150_020--Hb_005305_020 Hb_003355_010--Hb_106890_010 Hb_003355_010--Hb_030736_040 Hb_000496_130 Hb_000496_130 Hb_003355_010--Hb_000496_130 Hb_007741_120 Hb_007741_120 Hb_003355_010--Hb_007741_120 Hb_003490_060 Hb_003490_060 Hb_003355_010--Hb_003490_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.21687 6.44902 10.9765 7.90992 2.36726 4.53954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.97381 3.72408 4.3228 10.5691 22.1283

CAGE analysis