Hb_001571_060

Information

Type -
Description -
Location Contig1571: 62365-67502
Sequence    

Annotation

kegg
ID pmum:103335920
description uncharacterized LOC103335920
nr
ID XP_012084609.1
description PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
swissprot
ID O54453
description PHP domain-containing protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=trpH PE=3 SV=3
trembl
ID A0A067JX52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20197 PE=4 SV=1
Gene Ontology
ID GO:0003677
description polymerase histidinol phosphatase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13714: 62365-67412 , PASA_asmbl_13715: 63373-63777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_060 0.0 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
2 Hb_005015_110 0.0831993631 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
3 Hb_180378_010 0.0903039561 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
4 Hb_004218_180 0.0914183597 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
5 Hb_000666_010 0.0928185579 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002486_080 0.0931418635 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
7 Hb_000535_050 0.095481974 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
8 Hb_000358_020 0.0977799527 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
9 Hb_001105_100 0.0987302035 - - PREDICTED: cathepsin B [Jatropha curcas]
10 Hb_000365_010 0.0997145814 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
11 Hb_000909_080 0.1015145562 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
12 Hb_000035_350 0.1028440951 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
13 Hb_001277_050 0.1049121642 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
14 Hb_001511_090 0.1054632471 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
15 Hb_001277_030 0.1057466107 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Nelumbo nucifera]
16 Hb_003440_020 0.1074297058 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_005016_010 0.1079562514 - - AMP dependent CoA ligase, putative [Ricinus communis]
18 Hb_001141_240 0.1082437993 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
19 Hb_002281_020 0.1097642229 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
20 Hb_000139_340 0.1106515456 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001571_060 Hb_001571_060 Hb_005015_110 Hb_005015_110 Hb_001571_060--Hb_005015_110 Hb_180378_010 Hb_180378_010 Hb_001571_060--Hb_180378_010 Hb_004218_180 Hb_004218_180 Hb_001571_060--Hb_004218_180 Hb_000666_010 Hb_000666_010 Hb_001571_060--Hb_000666_010 Hb_002486_080 Hb_002486_080 Hb_001571_060--Hb_002486_080 Hb_000535_050 Hb_000535_050 Hb_001571_060--Hb_000535_050 Hb_000465_150 Hb_000465_150 Hb_005015_110--Hb_000465_150 Hb_005015_110--Hb_180378_010 Hb_005015_110--Hb_002486_080 Hb_000139_340 Hb_000139_340 Hb_005015_110--Hb_000139_340 Hb_007416_110 Hb_007416_110 Hb_005015_110--Hb_007416_110 Hb_005016_010 Hb_005016_010 Hb_180378_010--Hb_005016_010 Hb_180378_010--Hb_000139_340 Hb_000358_020 Hb_000358_020 Hb_180378_010--Hb_000358_020 Hb_005218_080 Hb_005218_080 Hb_180378_010--Hb_005218_080 Hb_006100_020 Hb_006100_020 Hb_004218_180--Hb_006100_020 Hb_000270_170 Hb_000270_170 Hb_004218_180--Hb_000270_170 Hb_011537_060 Hb_011537_060 Hb_004218_180--Hb_011537_060 Hb_001975_150 Hb_001975_150 Hb_004218_180--Hb_001975_150 Hb_008948_020 Hb_008948_020 Hb_004218_180--Hb_008948_020 Hb_001141_240 Hb_001141_240 Hb_004218_180--Hb_001141_240 Hb_000666_010--Hb_000535_050 Hb_001956_060 Hb_001956_060 Hb_000666_010--Hb_001956_060 Hb_007904_300 Hb_007904_300 Hb_000666_010--Hb_007904_300 Hb_000510_170 Hb_000510_170 Hb_000666_010--Hb_000510_170 Hb_001811_170 Hb_001811_170 Hb_000666_010--Hb_001811_170 Hb_000012_240 Hb_000012_240 Hb_000666_010--Hb_000012_240 Hb_001301_280 Hb_001301_280 Hb_002486_080--Hb_001301_280 Hb_001951_060 Hb_001951_060 Hb_002486_080--Hb_001951_060 Hb_007416_070 Hb_007416_070 Hb_002486_080--Hb_007416_070 Hb_002486_080--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_002486_080--Hb_002281_020 Hb_000535_050--Hb_007904_300 Hb_000535_050--Hb_004218_180 Hb_000227_160 Hb_000227_160 Hb_000535_050--Hb_000227_160 Hb_001586_030 Hb_001586_030 Hb_000535_050--Hb_001586_030 Hb_000109_180 Hb_000109_180 Hb_000535_050--Hb_000109_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74905 9.45761 9.52982 10.126 1.50048 2.78488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40054 7.09879 4.70142 12.4059 14.9898

CAGE analysis