Hb_000139_340

Information

Type -
Description -
Location Contig139: 357047-368308
Sequence    

Annotation

kegg
ID rcu:RCOM_0913550
description hypothetical protein
nr
ID XP_002517187.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94AG2
description Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2
trembl
ID B9RTW8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0913550 PE=3 SV=1
Gene Ontology
ID GO:0005524
description somatic embryogenesis receptor kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10660: 357150-359250 , PASA_asmbl_10661: 358264-358535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_340 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002900_110 0.0856994667 - - amino acid transporter, putative [Ricinus communis]
3 Hb_180378_010 0.0907678614 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
4 Hb_094970_010 0.1054939724 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
5 Hb_005015_110 0.1093872676 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
6 Hb_001571_060 0.1106515456 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
7 Hb_005218_080 0.1133564848 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001510_020 0.1170962342 - - Diaminopimelate epimerase, putative [Ricinus communis]
9 Hb_000251_030 0.1231613337 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
10 Hb_000012_110 0.1284214468 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
11 Hb_000548_070 0.1317273303 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
12 Hb_000510_080 0.1321980098 - - hypothetical protein CICLE_v10021453mg [Citrus clementina]
13 Hb_001728_140 0.1329690233 - - -
14 Hb_005276_040 0.1331177841 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
15 Hb_002477_290 0.1331453644 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
16 Hb_000035_390 0.1335958618 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
17 Hb_005016_010 0.1338648753 - - AMP dependent CoA ligase, putative [Ricinus communis]
18 Hb_003376_180 0.1340378083 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
19 Hb_002486_080 0.1342095176 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
20 Hb_003207_010 0.1345189089 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000139_340 Hb_000139_340 Hb_002900_110 Hb_002900_110 Hb_000139_340--Hb_002900_110 Hb_180378_010 Hb_180378_010 Hb_000139_340--Hb_180378_010 Hb_094970_010 Hb_094970_010 Hb_000139_340--Hb_094970_010 Hb_005015_110 Hb_005015_110 Hb_000139_340--Hb_005015_110 Hb_001571_060 Hb_001571_060 Hb_000139_340--Hb_001571_060 Hb_005218_080 Hb_005218_080 Hb_000139_340--Hb_005218_080 Hb_001277_030 Hb_001277_030 Hb_002900_110--Hb_001277_030 Hb_000914_100 Hb_000914_100 Hb_002900_110--Hb_000914_100 Hb_002900_110--Hb_001571_060 Hb_002900_110--Hb_094970_010 Hb_000510_080 Hb_000510_080 Hb_002900_110--Hb_000510_080 Hb_005016_010 Hb_005016_010 Hb_180378_010--Hb_005016_010 Hb_180378_010--Hb_005015_110 Hb_180378_010--Hb_001571_060 Hb_000358_020 Hb_000358_020 Hb_180378_010--Hb_000358_020 Hb_180378_010--Hb_005218_080 Hb_001910_010 Hb_001910_010 Hb_094970_010--Hb_001910_010 Hb_006059_030 Hb_006059_030 Hb_094970_010--Hb_006059_030 Hb_000120_080 Hb_000120_080 Hb_094970_010--Hb_000120_080 Hb_003207_010 Hb_003207_010 Hb_094970_010--Hb_003207_010 Hb_001493_150 Hb_001493_150 Hb_094970_010--Hb_001493_150 Hb_000465_150 Hb_000465_150 Hb_005015_110--Hb_000465_150 Hb_005015_110--Hb_001571_060 Hb_002486_080 Hb_002486_080 Hb_005015_110--Hb_002486_080 Hb_007416_110 Hb_007416_110 Hb_005015_110--Hb_007416_110 Hb_004218_180 Hb_004218_180 Hb_001571_060--Hb_004218_180 Hb_000666_010 Hb_000666_010 Hb_001571_060--Hb_000666_010 Hb_001571_060--Hb_002486_080 Hb_000535_050 Hb_000535_050 Hb_001571_060--Hb_000535_050 Hb_005218_080--Hb_000358_020 Hb_003440_020 Hb_003440_020 Hb_005218_080--Hb_003440_020 Hb_000909_080 Hb_000909_080 Hb_005218_080--Hb_000909_080 Hb_008147_080 Hb_008147_080 Hb_005218_080--Hb_008147_080 Hb_171718_010 Hb_171718_010 Hb_005218_080--Hb_171718_010 Hb_002762_110 Hb_002762_110 Hb_005218_080--Hb_002762_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11856 7.86402 10.3225 13.6142 1.9073 1.70104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2328 12.3646 8.89474 17.6029 21.29

CAGE analysis