Hb_003207_010

Information

Type -
Description -
Location Contig3207: 2904-10119
Sequence    

Annotation

kegg
ID rcu:RCOM_1682980
description phospholipase d beta, putative (EC:3.1.4.4)
nr
ID XP_012087043.1
description PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
swissprot
ID P93733
description Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4
trembl
ID A0A067K172
description Phospholipase D OS=Jatropha curcas GN=JCGZ_20700 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phospholipase d beta 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33892: 3738-5121 , PASA_asmbl_33893: 6530-8237 , PASA_asmbl_33894: 8320-8699 , PASA_asmbl_33896: 9447-10282
cDNA
(Sanger)
(ID:Location)		 013_E20.ab1: 9800-10210

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_010 0.0 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
2 Hb_094970_010 0.1058633288 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
3 Hb_001731_030 0.118089534 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
4 Hb_005015_110 0.1287450034 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
5 Hb_000808_170 0.1292203874 - - protein disulfide isomerase, putative [Ricinus communis]
6 Hb_001493_150 0.1319845174 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
7 Hb_000139_340 0.1345189089 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001728_140 0.134879375 - - -
9 Hb_028960_030 0.1379137197 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
10 Hb_001269_650 0.1399172052 - - transporter, putative [Ricinus communis]
11 Hb_000251_030 0.1415071946 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
12 Hb_000465_150 0.1436103519 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
13 Hb_003531_070 0.1441469376 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
14 Hb_000510_080 0.1445860856 - - hypothetical protein CICLE_v10021453mg [Citrus clementina]
15 Hb_011224_160 0.147061026 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
16 Hb_011282_050 0.148649146 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
17 Hb_006059_030 0.1511729461 - - glutamate dehydrogenase, putative [Ricinus communis]
18 Hb_000107_270 0.1514907881 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
19 Hb_002900_110 0.1515177086 - - amino acid transporter, putative [Ricinus communis]
20 Hb_004291_040 0.1517979946 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_003207_010 Hb_003207_010 Hb_094970_010 Hb_094970_010 Hb_003207_010--Hb_094970_010 Hb_001731_030 Hb_001731_030 Hb_003207_010--Hb_001731_030 Hb_005015_110 Hb_005015_110 Hb_003207_010--Hb_005015_110 Hb_000808_170 Hb_000808_170 Hb_003207_010--Hb_000808_170 Hb_001493_150 Hb_001493_150 Hb_003207_010--Hb_001493_150 Hb_000139_340 Hb_000139_340 Hb_003207_010--Hb_000139_340 Hb_001910_010 Hb_001910_010 Hb_094970_010--Hb_001910_010 Hb_006059_030 Hb_006059_030 Hb_094970_010--Hb_006059_030 Hb_000120_080 Hb_000120_080 Hb_094970_010--Hb_000120_080 Hb_094970_010--Hb_000139_340 Hb_094970_010--Hb_001493_150 Hb_001731_030--Hb_001493_150 Hb_001731_030--Hb_000808_170 Hb_028960_030 Hb_028960_030 Hb_001731_030--Hb_028960_030 Hb_073171_100 Hb_073171_100 Hb_001731_030--Hb_073171_100 Hb_000159_120 Hb_000159_120 Hb_001731_030--Hb_000159_120 Hb_011224_160 Hb_011224_160 Hb_001731_030--Hb_011224_160 Hb_000465_150 Hb_000465_150 Hb_005015_110--Hb_000465_150 Hb_180378_010 Hb_180378_010 Hb_005015_110--Hb_180378_010 Hb_001571_060 Hb_001571_060 Hb_005015_110--Hb_001571_060 Hb_002486_080 Hb_002486_080 Hb_005015_110--Hb_002486_080 Hb_005015_110--Hb_000139_340 Hb_007416_110 Hb_007416_110 Hb_005015_110--Hb_007416_110 Hb_006846_120 Hb_006846_120 Hb_000808_170--Hb_006846_120 Hb_000041_060 Hb_000041_060 Hb_000808_170--Hb_000041_060 Hb_000317_350 Hb_000317_350 Hb_000808_170--Hb_000317_350 Hb_000808_170--Hb_073171_100 Hb_009615_060 Hb_009615_060 Hb_001493_150--Hb_009615_060 Hb_002301_100 Hb_002301_100 Hb_001493_150--Hb_002301_100 Hb_012393_030 Hb_012393_030 Hb_001493_150--Hb_012393_030 Hb_001221_020 Hb_001221_020 Hb_001493_150--Hb_001221_020 Hb_005648_010 Hb_005648_010 Hb_001493_150--Hb_005648_010 Hb_021576_010 Hb_021576_010 Hb_001493_150--Hb_021576_010 Hb_002900_110 Hb_002900_110 Hb_000139_340--Hb_002900_110 Hb_000139_340--Hb_180378_010 Hb_000139_340--Hb_001571_060 Hb_005218_080 Hb_005218_080 Hb_000139_340--Hb_005218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77119 4.74703 8.8551 4.71868 2.05387 1.22251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.81504 6.75122 6.70753 16.9433 10.4352

CAGE analysis