Hb_006846_120

Information

Type -
Description -
Location Contig6846: 97628-111427
Sequence    

Annotation

kegg
ID rcu:RCOM_1503150
description Succinate/fumarate mitochondrial transporter, putative
nr
ID XP_002511072.1
description Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
swissprot
ID Q5XHA0
description Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1
trembl
ID B9RA47
description Succinate/fumarate mitochondrial transporter, putative OS=Ricinus communis GN=RCOM_1503150 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-binding mitochondrial carrier protein s -1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54070: 97664-101397 , PASA_asmbl_54071: 101901-106655 , PASA_asmbl_54072: 103134-103399 , PASA_asmbl_54073: 108684-110475 , PASA_asmbl_54074: 110585-111005
cDNA
(Sanger)
(ID:Location)		 015_B04.ab1: 100686-101395

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_120 0.0 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
2 Hb_000808_170 0.1082461596 - - protein disulfide isomerase, putative [Ricinus communis]
3 Hb_002539_020 0.125111568 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
4 Hb_001731_030 0.1319277597 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
5 Hb_000181_020 0.1329921949 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
6 Hb_000625_030 0.1371923538 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
7 Hb_007423_020 0.1389667576 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
8 Hb_000041_060 0.1390006485 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
9 Hb_000317_350 0.1440878048 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
10 Hb_001269_650 0.1456357241 - - transporter, putative [Ricinus communis]
11 Hb_008226_070 0.1462192441 - - PREDICTED: expansin-A8 [Jatropha curcas]
12 Hb_012545_090 0.1469068527 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
13 Hb_009615_060 0.1511533067 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
14 Hb_003207_010 0.152230893 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
15 Hb_000190_090 0.1527037436 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
16 Hb_000768_160 0.1529560786 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
17 Hb_001493_150 0.1542950788 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
18 Hb_012325_010 0.1558662736 - - hypothetical protein RCOM_0068670 [Ricinus communis]
19 Hb_000227_040 0.1573460053 - - Stem-specific protein TSJT1, putative [Ricinus communis]
20 Hb_001728_140 0.158128913 - - -

Gene co-expression network

sample Hb_006846_120 Hb_006846_120 Hb_000808_170 Hb_000808_170 Hb_006846_120--Hb_000808_170 Hb_002539_020 Hb_002539_020 Hb_006846_120--Hb_002539_020 Hb_001731_030 Hb_001731_030 Hb_006846_120--Hb_001731_030 Hb_000181_020 Hb_000181_020 Hb_006846_120--Hb_000181_020 Hb_000625_030 Hb_000625_030 Hb_006846_120--Hb_000625_030 Hb_007423_020 Hb_007423_020 Hb_006846_120--Hb_007423_020 Hb_000808_170--Hb_001731_030 Hb_000041_060 Hb_000041_060 Hb_000808_170--Hb_000041_060 Hb_000317_350 Hb_000317_350 Hb_000808_170--Hb_000317_350 Hb_003207_010 Hb_003207_010 Hb_000808_170--Hb_003207_010 Hb_073171_100 Hb_073171_100 Hb_000808_170--Hb_073171_100 Hb_002539_010 Hb_002539_010 Hb_002539_020--Hb_002539_010 Hb_008226_070 Hb_008226_070 Hb_002539_020--Hb_008226_070 Hb_002539_020--Hb_007423_020 Hb_100147_010 Hb_100147_010 Hb_002539_020--Hb_100147_010 Hb_000094_370 Hb_000094_370 Hb_002539_020--Hb_000094_370 Hb_001493_150 Hb_001493_150 Hb_001731_030--Hb_001493_150 Hb_028960_030 Hb_028960_030 Hb_001731_030--Hb_028960_030 Hb_001731_030--Hb_073171_100 Hb_000159_120 Hb_000159_120 Hb_001731_030--Hb_000159_120 Hb_011224_160 Hb_011224_160 Hb_001731_030--Hb_011224_160 Hb_004041_100 Hb_004041_100 Hb_000181_020--Hb_004041_100 Hb_000181_020--Hb_000625_030 Hb_000347_110 Hb_000347_110 Hb_000181_020--Hb_000347_110 Hb_011360_060 Hb_011360_060 Hb_000181_020--Hb_011360_060 Hb_001500_070 Hb_001500_070 Hb_000181_020--Hb_001500_070 Hb_008749_020 Hb_008749_020 Hb_000625_030--Hb_008749_020 Hb_000625_030--Hb_004041_100 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_000720_090 Hb_000720_090 Hb_000625_030--Hb_000720_090 Hb_007423_020--Hb_000808_170 Hb_007423_020--Hb_000625_030 Hb_007423_020--Hb_000181_020 Hb_007423_020--Hb_002539_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17166 6.47179 8.09503 9.66322 4.26603 2.60804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15003 6.75812 6.43321 37.132 16.7415

CAGE analysis