Hb_007423_020

Information

Type -
Description -
Location Contig7423: 8229-11859
Sequence    

Annotation

kegg
ID rcu:RCOM_0824180
description 2-nitropropane dioxygenase precursor, putative (EC:1.13.11.32)
nr
ID XP_002525846.1
description 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
swissprot
ID O05413
description Probable nitronate monooxygenase OS=Bacillus subtilis (strain 168) GN=yrpB PE=3 SV=1
trembl
ID B9SIM7
description 2-nitropropane dioxygenase, putative OS=Ricinus communis GN=RCOM_0824180 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nitronate monooxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56522: 8197-11608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007423_020 0.0 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
2 Hb_002539_020 0.1362370885 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
3 Hb_000808_170 0.1380171463 - - protein disulfide isomerase, putative [Ricinus communis]
4 Hb_006846_120 0.1389667576 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
5 Hb_000625_030 0.1494805289 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
6 Hb_000181_020 0.1609322397 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
7 Hb_002539_010 0.1630627328 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
8 Hb_002232_160 0.1662357665 - - Transaminase mtnE, putative [Ricinus communis]
9 Hb_001414_020 0.1677411062 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
10 Hb_001500_070 0.1697764169 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004041_100 0.1793287906 - - -
12 Hb_000041_060 0.1793696591 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_001731_030 0.1798609177 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
14 Hb_000453_240 0.1835841017 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
15 Hb_001040_150 0.1837636286 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000173_260 0.184110742 - - hypothetical protein L484_010046 [Morus notabilis]
17 Hb_006141_030 0.1846166624 - - -
18 Hb_011633_040 0.1853137649 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
19 Hb_000061_090 0.1879389204 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
20 Hb_027380_190 0.188957231 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007423_020 Hb_007423_020 Hb_002539_020 Hb_002539_020 Hb_007423_020--Hb_002539_020 Hb_000808_170 Hb_000808_170 Hb_007423_020--Hb_000808_170 Hb_006846_120 Hb_006846_120 Hb_007423_020--Hb_006846_120 Hb_000625_030 Hb_000625_030 Hb_007423_020--Hb_000625_030 Hb_000181_020 Hb_000181_020 Hb_007423_020--Hb_000181_020 Hb_002539_010 Hb_002539_010 Hb_007423_020--Hb_002539_010 Hb_002539_020--Hb_002539_010 Hb_002539_020--Hb_006846_120 Hb_008226_070 Hb_008226_070 Hb_002539_020--Hb_008226_070 Hb_100147_010 Hb_100147_010 Hb_002539_020--Hb_100147_010 Hb_000094_370 Hb_000094_370 Hb_002539_020--Hb_000094_370 Hb_001731_030 Hb_001731_030 Hb_000808_170--Hb_001731_030 Hb_000808_170--Hb_006846_120 Hb_000041_060 Hb_000041_060 Hb_000808_170--Hb_000041_060 Hb_000317_350 Hb_000317_350 Hb_000808_170--Hb_000317_350 Hb_003207_010 Hb_003207_010 Hb_000808_170--Hb_003207_010 Hb_073171_100 Hb_073171_100 Hb_000808_170--Hb_073171_100 Hb_006846_120--Hb_001731_030 Hb_006846_120--Hb_000181_020 Hb_006846_120--Hb_000625_030 Hb_008749_020 Hb_008749_020 Hb_000625_030--Hb_008749_020 Hb_004041_100 Hb_004041_100 Hb_000625_030--Hb_004041_100 Hb_000625_030--Hb_000181_020 Hb_001500_070 Hb_001500_070 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_000720_090 Hb_000720_090 Hb_000625_030--Hb_000720_090 Hb_000181_020--Hb_004041_100 Hb_000347_110 Hb_000347_110 Hb_000181_020--Hb_000347_110 Hb_011360_060 Hb_011360_060 Hb_000181_020--Hb_011360_060 Hb_000181_020--Hb_001500_070 Hb_011633_040 Hb_011633_040 Hb_002539_010--Hb_011633_040 Hb_000337_010 Hb_000337_010 Hb_002539_010--Hb_000337_010 Hb_002539_010--Hb_000625_030 Hb_002539_010--Hb_001500_070 Hb_002539_010--Hb_008226_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.853354 2.54642 6.21765 4.40146 0.251247 1.98261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.78182 4.15165 2.38824 20.8283 8.26961

CAGE analysis