Hb_008749_020

Information

Type -
Description -
Location Contig8749: 26112-33791
Sequence    

Annotation

kegg
ID rcu:RCOM_0843010
description hypothetical protein
nr
ID XP_002526016.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GYX9
description Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=1 SV=1
trembl
ID B9SJ47
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0843010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61237: 26151-33807
cDNA
(Sanger)
(ID:Location)		 013_A13.ab1: 26151-27930

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008749_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000625_030 0.083977629 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
3 Hb_004041_100 0.1102978437 - - -
4 Hb_000907_150 0.1211552338 - - hypothetical protein L484_004295 [Morus notabilis]
5 Hb_000406_090 0.1302450993 - - unknown [Populus trichocarpa]
6 Hb_000720_090 0.1327572923 transcription factor TF Family: MYB myb, putative [Ricinus communis]
7 Hb_001500_070 0.1379411307 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002235_050 0.1397294275 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
9 Hb_000173_260 0.1417205852 - - hypothetical protein L484_010046 [Morus notabilis]
10 Hb_000172_280 0.1434476167 - - aspartate aminotransferase, putative [Ricinus communis]
11 Hb_012325_010 0.1462396695 - - hypothetical protein RCOM_0068670 [Ricinus communis]
12 Hb_004883_020 0.1531042595 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
13 Hb_000227_330 0.1548276912 - - Acyl-CoA synthetase [Ricinus communis]
14 Hb_000220_110 0.1551242021 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
15 Hb_098533_010 0.1561624771 - - hypothetical protein L484_003492 [Morus notabilis]
16 Hb_000181_020 0.162430198 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
17 Hb_000347_110 0.1625062766 - - BnaA05g25330D [Brassica napus]
18 Hb_000258_090 0.1632022376 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
19 Hb_000465_150 0.1654405644 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
20 Hb_001776_010 0.1656362329 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]

Gene co-expression network

sample Hb_008749_020 Hb_008749_020 Hb_000625_030 Hb_000625_030 Hb_008749_020--Hb_000625_030 Hb_004041_100 Hb_004041_100 Hb_008749_020--Hb_004041_100 Hb_000907_150 Hb_000907_150 Hb_008749_020--Hb_000907_150 Hb_000406_090 Hb_000406_090 Hb_008749_020--Hb_000406_090 Hb_000720_090 Hb_000720_090 Hb_008749_020--Hb_000720_090 Hb_001500_070 Hb_001500_070 Hb_008749_020--Hb_001500_070 Hb_000625_030--Hb_004041_100 Hb_000181_020 Hb_000181_020 Hb_000625_030--Hb_000181_020 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_000625_030--Hb_000720_090 Hb_000347_110 Hb_000347_110 Hb_004041_100--Hb_000347_110 Hb_004041_100--Hb_000181_020 Hb_000173_260 Hb_000173_260 Hb_004041_100--Hb_000173_260 Hb_004041_100--Hb_001500_070 Hb_000220_110 Hb_000220_110 Hb_000907_150--Hb_000220_110 Hb_000172_280 Hb_000172_280 Hb_000907_150--Hb_000172_280 Hb_000465_150 Hb_000465_150 Hb_000907_150--Hb_000465_150 Hb_003227_010 Hb_003227_010 Hb_000907_150--Hb_003227_010 Hb_001616_070 Hb_001616_070 Hb_000907_150--Hb_001616_070 Hb_001677_100 Hb_001677_100 Hb_000406_090--Hb_001677_100 Hb_004297_090 Hb_004297_090 Hb_000406_090--Hb_004297_090 Hb_002093_050 Hb_002093_050 Hb_000406_090--Hb_002093_050 Hb_001018_060 Hb_001018_060 Hb_000406_090--Hb_001018_060 Hb_000679_110 Hb_000679_110 Hb_000406_090--Hb_000679_110 Hb_000707_010 Hb_000707_010 Hb_000720_090--Hb_000707_010 Hb_000042_380 Hb_000042_380 Hb_000720_090--Hb_000042_380 Hb_002527_060 Hb_002527_060 Hb_000720_090--Hb_002527_060 Hb_008695_150 Hb_008695_150 Hb_000720_090--Hb_008695_150 Hb_003626_050 Hb_003626_050 Hb_001500_070--Hb_003626_050 Hb_002213_090 Hb_002213_090 Hb_001500_070--Hb_002213_090 Hb_001500_070--Hb_000347_110 Hb_012325_010 Hb_012325_010 Hb_001500_070--Hb_012325_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.672061 3.11113 6.16552 5.02959 1.59679 0.478014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.08753 1.4732 0.746498 11.8868 5.13339

CAGE analysis