Hb_001018_060

Information

Type -
Description -
Location Contig1018: 53090-57583
Sequence    

Annotation

kegg
ID cbr:CBG22238
description Hypothetical protein CBG22238
nr
ID KJB07519.1
description hypothetical protein B456_001G028000 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2PL39
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G028000 PE=4 SV=1
Gene Ontology
ID GO:0004069
description aspartate cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00880: 53110-57571
cDNA
(Sanger)
(ID:Location)		 019_J11.ab1: 55428-57571 , 019_M22.ab1: 55396-57571 , 030_I13.ab1: 55410-57521 , 051_H10.ab1: 55439-57571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001018_060 0.0 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
2 Hb_002808_020 0.1073499097 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
3 Hb_000661_220 0.1304025147 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
4 Hb_000849_080 0.1322773042 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
5 Hb_003227_010 0.1335167167 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
6 Hb_002392_020 0.135077824 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
7 Hb_001677_100 0.136247399 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
8 Hb_103688_010 0.1402088199 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
9 Hb_132101_010 0.1410320306 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
10 Hb_000678_010 0.1416730623 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
11 Hb_000122_080 0.1420389136 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
12 Hb_000406_090 0.1422291549 - - unknown [Populus trichocarpa]
13 Hb_002639_030 0.144023419 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
14 Hb_024758_020 0.1440683451 - - acyl-CoA binding protein 3B [Vernicia fordii]
15 Hb_001085_070 0.1448730505 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
16 Hb_002284_100 0.1455771806 - - ribophorin, putative [Ricinus communis]
17 Hb_003626_050 0.1477276396 - - malic enzyme, putative [Ricinus communis]
18 Hb_001434_020 0.148368685 - - hypothetical protein RCOM_0841800 [Ricinus communis]
19 Hb_002213_090 0.1492530545 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
20 Hb_004746_010 0.1516766199 - - aldo/keto reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001018_060 Hb_001018_060 Hb_002808_020 Hb_002808_020 Hb_001018_060--Hb_002808_020 Hb_000661_220 Hb_000661_220 Hb_001018_060--Hb_000661_220 Hb_000849_080 Hb_000849_080 Hb_001018_060--Hb_000849_080 Hb_003227_010 Hb_003227_010 Hb_001018_060--Hb_003227_010 Hb_002392_020 Hb_002392_020 Hb_001018_060--Hb_002392_020 Hb_001677_100 Hb_001677_100 Hb_001018_060--Hb_001677_100 Hb_002639_030 Hb_002639_030 Hb_002808_020--Hb_002639_030 Hb_103688_010 Hb_103688_010 Hb_002808_020--Hb_103688_010 Hb_004837_280 Hb_004837_280 Hb_002808_020--Hb_004837_280 Hb_002808_020--Hb_000849_080 Hb_002301_030 Hb_002301_030 Hb_002808_020--Hb_002301_030 Hb_002687_200 Hb_002687_200 Hb_002808_020--Hb_002687_200 Hb_024758_020 Hb_024758_020 Hb_000661_220--Hb_024758_020 Hb_000661_220--Hb_001677_100 Hb_000567_090 Hb_000567_090 Hb_000661_220--Hb_000567_090 Hb_000000_330 Hb_000000_330 Hb_000661_220--Hb_000000_330 Hb_000803_120 Hb_000803_120 Hb_000661_220--Hb_000803_120 Hb_002849_050 Hb_002849_050 Hb_000661_220--Hb_002849_050 Hb_000140_450 Hb_000140_450 Hb_000849_080--Hb_000140_450 Hb_000849_080--Hb_103688_010 Hb_002007_260 Hb_002007_260 Hb_000849_080--Hb_002007_260 Hb_000575_100 Hb_000575_100 Hb_000849_080--Hb_000575_100 Hb_024570_040 Hb_024570_040 Hb_000849_080--Hb_024570_040 Hb_000220_110 Hb_000220_110 Hb_003227_010--Hb_000220_110 Hb_010872_040 Hb_010872_040 Hb_003227_010--Hb_010872_040 Hb_000139_140 Hb_000139_140 Hb_003227_010--Hb_000139_140 Hb_000235_050 Hb_000235_050 Hb_003227_010--Hb_000235_050 Hb_005970_010 Hb_005970_010 Hb_003227_010--Hb_005970_010 Hb_003227_010--Hb_002808_020 Hb_003490_060 Hb_003490_060 Hb_002392_020--Hb_003490_060 Hb_000358_210 Hb_000358_210 Hb_002392_020--Hb_000358_210 Hb_001434_020 Hb_001434_020 Hb_002392_020--Hb_001434_020 Hb_007943_150 Hb_007943_150 Hb_002392_020--Hb_007943_150 Hb_002284_100 Hb_002284_100 Hb_002392_020--Hb_002284_100 Hb_002232_490 Hb_002232_490 Hb_002392_020--Hb_002232_490 Hb_004297_090 Hb_004297_090 Hb_001677_100--Hb_004297_090 Hb_001677_100--Hb_001434_020 Hb_009296_020 Hb_009296_020 Hb_001677_100--Hb_009296_020 Hb_000260_400 Hb_000260_400 Hb_001677_100--Hb_000260_400 Hb_011214_110 Hb_011214_110 Hb_001677_100--Hb_011214_110 Hb_001677_100--Hb_002849_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.806149 1.41225 4.79238 3.8538 1.5389 1.79694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38748 0.476363 0.412846 5.89682 2.50897

CAGE analysis