Hb_010872_040

Information

Type -
Description -
Location Contig10872: 24976-26180
Sequence    

Annotation

kegg
ID zma:100857085
description P4H6-1; prolyl 4-hydroxylase 6-1
nr
ID EMT18066.1
description hypothetical protein F775_31993 [Aegilops tauschii]
swissprot
ID -
description -
trembl
ID N1R0K7
description Uncharacterized protein OS=Aegilops tauschii GN=F775_31993 PE=4 SV=1
Gene Ontology
ID GO:0004656
description probable prolyl 4-hydroxylase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02636: 25084-36150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010872_040 0.0 - - hypothetical protein F775_31993 [Aegilops tauschii]
2 Hb_003227_010 0.0968246519 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
3 Hb_000235_050 0.1196017416 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005970_010 0.1252606495 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
5 Hb_028115_010 0.1324321996 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001014_190 0.136851501 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
7 Hb_000139_140 0.1430860107 - - Acyl-CoA synthetase [Ricinus communis]
8 Hb_001616_070 0.1437590356 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
9 Hb_000220_110 0.1441928579 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
10 Hb_132101_010 0.1500022176 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
11 Hb_002301_250 0.1517330061 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
12 Hb_002272_170 0.1535410262 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
13 Hb_012180_010 0.1563650833 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
14 Hb_001366_060 0.1566628458 - - -
15 Hb_004330_080 0.1569485882 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
16 Hb_000120_230 0.1574814065 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
17 Hb_029510_100 0.1594447417 - - scab resistance family protein [Populus trichocarpa]
18 Hb_000009_060 0.1598947191 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
19 Hb_001004_140 0.1606061022 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
20 Hb_002213_090 0.1608406367 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]

Gene co-expression network

sample Hb_010872_040 Hb_010872_040 Hb_003227_010 Hb_003227_010 Hb_010872_040--Hb_003227_010 Hb_000235_050 Hb_000235_050 Hb_010872_040--Hb_000235_050 Hb_005970_010 Hb_005970_010 Hb_010872_040--Hb_005970_010 Hb_028115_010 Hb_028115_010 Hb_010872_040--Hb_028115_010 Hb_001014_190 Hb_001014_190 Hb_010872_040--Hb_001014_190 Hb_000139_140 Hb_000139_140 Hb_010872_040--Hb_000139_140 Hb_000220_110 Hb_000220_110 Hb_003227_010--Hb_000220_110 Hb_003227_010--Hb_000139_140 Hb_003227_010--Hb_000235_050 Hb_003227_010--Hb_005970_010 Hb_002808_020 Hb_002808_020 Hb_003227_010--Hb_002808_020 Hb_000401_010 Hb_000401_010 Hb_000235_050--Hb_000401_010 Hb_000248_100 Hb_000248_100 Hb_000235_050--Hb_000248_100 Hb_000235_050--Hb_005970_010 Hb_008053_060 Hb_008053_060 Hb_000235_050--Hb_008053_060 Hb_001085_080 Hb_001085_080 Hb_005970_010--Hb_001085_080 Hb_000000_120 Hb_000000_120 Hb_005970_010--Hb_000000_120 Hb_012180_010 Hb_012180_010 Hb_005970_010--Hb_012180_010 Hb_001097_040 Hb_001097_040 Hb_005970_010--Hb_001097_040 Hb_003506_020 Hb_003506_020 Hb_005970_010--Hb_003506_020 Hb_028077_020 Hb_028077_020 Hb_005970_010--Hb_028077_020 Hb_028115_010--Hb_005970_010 Hb_003972_040 Hb_003972_040 Hb_028115_010--Hb_003972_040 Hb_028115_010--Hb_000000_120 Hb_028115_010--Hb_001014_190 Hb_000818_080 Hb_000818_080 Hb_028115_010--Hb_000818_080 Hb_029510_100 Hb_029510_100 Hb_001014_190--Hb_029510_100 Hb_001014_190--Hb_005970_010 Hb_004330_080 Hb_004330_080 Hb_001014_190--Hb_004330_080 Hb_006683_020 Hb_006683_020 Hb_001014_190--Hb_006683_020 Hb_000683_050 Hb_000683_050 Hb_001014_190--Hb_000683_050 Hb_019280_020 Hb_019280_020 Hb_001014_190--Hb_019280_020 Hb_000139_140--Hb_000220_110 Hb_000139_140--Hb_001014_190 Hb_004495_020 Hb_004495_020 Hb_000139_140--Hb_004495_020 Hb_000009_140 Hb_000009_140 Hb_000139_140--Hb_000009_140 Hb_009646_010 Hb_009646_010 Hb_000139_140--Hb_009646_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40415 5.04923 6.36547 13.8133 1.82267 4.09975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04176 2.38037 1.69723 14.3788 2.54753

CAGE analysis