Hb_029510_100

Information

Type -
Description -
Location Contig29510: 61367-64360
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11720g
description scab resistance family protein
nr
ID XP_002315907.2
description scab resistance family protein [Populus trichocarpa]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID B9HWB2
description Scab resistance family protein OS=Populus trichocarpa GN=POPTR_0010s11720g PE=4 SV=2
Gene Ontology
ID GO:0005515
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30871: 61291-62340 , PASA_asmbl_30873: 62793-63110 , PASA_asmbl_30874: 63128-63406 , PASA_asmbl_30876: 64063-64349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_100 0.0 - - scab resistance family protein [Populus trichocarpa]
2 Hb_001014_190 0.0761033679 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
3 Hb_004330_080 0.1063321943 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
4 Hb_019280_020 0.1066097505 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
5 Hb_004094_020 0.1214841766 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
6 Hb_000120_230 0.1220659419 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
7 Hb_012362_030 0.1253592806 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
8 Hb_006683_020 0.1275402401 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
9 Hb_135757_020 0.1291855609 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
10 Hb_000062_530 0.1361342297 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
11 Hb_030565_110 0.1395450147 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
12 Hb_005970_010 0.1424484874 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
13 Hb_001006_270 0.1438468472 - - peptide transporter, putative [Ricinus communis]
14 Hb_005914_140 0.1476680988 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
15 Hb_001481_150 0.1483431641 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
16 Hb_006922_090 0.1516753957 - - PREDICTED: interaptin [Jatropha curcas]
17 Hb_000003_310 0.1529327123 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
18 Hb_000028_340 0.1538358085 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
19 Hb_001021_010 0.1538875211 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
20 Hb_000494_030 0.1542551383 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]

Gene co-expression network

sample Hb_029510_100 Hb_029510_100 Hb_001014_190 Hb_001014_190 Hb_029510_100--Hb_001014_190 Hb_004330_080 Hb_004330_080 Hb_029510_100--Hb_004330_080 Hb_019280_020 Hb_019280_020 Hb_029510_100--Hb_019280_020 Hb_004094_020 Hb_004094_020 Hb_029510_100--Hb_004094_020 Hb_000120_230 Hb_000120_230 Hb_029510_100--Hb_000120_230 Hb_012362_030 Hb_012362_030 Hb_029510_100--Hb_012362_030 Hb_005970_010 Hb_005970_010 Hb_001014_190--Hb_005970_010 Hb_001014_190--Hb_004330_080 Hb_006683_020 Hb_006683_020 Hb_001014_190--Hb_006683_020 Hb_000683_050 Hb_000683_050 Hb_001014_190--Hb_000683_050 Hb_001014_190--Hb_019280_020 Hb_135757_020 Hb_135757_020 Hb_004330_080--Hb_135757_020 Hb_004330_080--Hb_004094_020 Hb_000029_440 Hb_000029_440 Hb_004330_080--Hb_000029_440 Hb_030565_110 Hb_030565_110 Hb_004330_080--Hb_030565_110 Hb_019280_020--Hb_012362_030 Hb_001481_150 Hb_001481_150 Hb_019280_020--Hb_001481_150 Hb_000152_710 Hb_000152_710 Hb_019280_020--Hb_000152_710 Hb_033152_070 Hb_033152_070 Hb_019280_020--Hb_033152_070 Hb_004525_040 Hb_004525_040 Hb_019280_020--Hb_004525_040 Hb_183867_010 Hb_183867_010 Hb_004094_020--Hb_183867_010 Hb_004094_020--Hb_135757_020 Hb_005914_140 Hb_005914_140 Hb_004094_020--Hb_005914_140 Hb_000494_030 Hb_000494_030 Hb_004094_020--Hb_000494_030 Hb_001006_270 Hb_001006_270 Hb_004094_020--Hb_001006_270 Hb_003994_220 Hb_003994_220 Hb_004094_020--Hb_003994_220 Hb_011287_010 Hb_011287_010 Hb_000120_230--Hb_011287_010 Hb_008468_030 Hb_008468_030 Hb_000120_230--Hb_008468_030 Hb_000120_230--Hb_006683_020 Hb_000120_230--Hb_005914_140 Hb_000120_230--Hb_005970_010 Hb_000062_530 Hb_000062_530 Hb_012362_030--Hb_000062_530 Hb_000062_090 Hb_000062_090 Hb_012362_030--Hb_000062_090 Hb_147245_010 Hb_147245_010 Hb_012362_030--Hb_147245_010 Hb_000008_190 Hb_000008_190 Hb_012362_030--Hb_000008_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.915836 2.3003 1.33644 7.57627 0.670101 0.903814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.741936 0.835703 1.51097 4.85849 1.75854

CAGE analysis