Hb_030565_110

Information

Type -
Description -
Location Contig30565: 102165-104633
Sequence    

Annotation

kegg
ID tcc:TCM_020226
description S-adenosyl-L-homocysteine hydrolase
nr
ID XP_012071085.1
description PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
swissprot
ID P50246
description Adenosylhomocysteinase OS=Medicago sativa GN=SAHH PE=2 SV=1
trembl
ID A0A067KT70
description Adenosylhomocysteinase OS=Jatropha curcas GN=JCGZ_01084 PE=3 SV=1
Gene Ontology
ID GO:0004013
description s-adenosyl-l-homocysteine hydrolase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32280: 102219-105090
cDNA
(Sanger)
(ID:Location)		 001_E17.ab1: 102246-103038 , 005_C14.ab1: 102300-103946 , 009_J18.ab1: 102219-102964 , 015_F06.ab1: 102246-102946 , 031_M21.ab1: 102219-102974 , 036_D11.ab1: 102246-103059 , 040_M23.ab1: 102300-103057 , 050_K02.ab1: 102300-102932 , 051_G18.ab1: 102300-103047

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030565_110 0.0 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
2 Hb_002072_010 0.0728092536 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003371_190 0.0952537718 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
4 Hb_000003_310 0.098832506 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
5 Hb_000244_260 0.1077397375 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
6 Hb_000254_070 0.1079749708 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
7 Hb_002367_110 0.1106480367 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
8 Hb_000000_120 0.1132605437 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
9 Hb_000029_440 0.1138462453 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
10 Hb_000679_040 0.1225963813 - - Cellulose synthase 1 [Theobroma cacao]
11 Hb_000674_010 0.1245516622 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
12 Hb_069619_010 0.1251372729 - - Aspartic proteinase precursor, putative [Ricinus communis]
13 Hb_003058_200 0.1289869505 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
14 Hb_028077_020 0.1306618746 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000019_170 0.1306951048 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
16 Hb_001105_130 0.1313485967 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
17 Hb_000220_080 0.1322422587 - - kinase, putative [Ricinus communis]
18 Hb_001006_270 0.1322940677 - - peptide transporter, putative [Ricinus communis]
19 Hb_009535_030 0.1354878826 - - CP2 [Hevea brasiliensis]
20 Hb_000701_030 0.1369910166 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_030565_110 Hb_030565_110 Hb_002072_010 Hb_002072_010 Hb_030565_110--Hb_002072_010 Hb_003371_190 Hb_003371_190 Hb_030565_110--Hb_003371_190 Hb_000003_310 Hb_000003_310 Hb_030565_110--Hb_000003_310 Hb_000244_260 Hb_000244_260 Hb_030565_110--Hb_000244_260 Hb_000254_070 Hb_000254_070 Hb_030565_110--Hb_000254_070 Hb_002367_110 Hb_002367_110 Hb_030565_110--Hb_002367_110 Hb_003058_200 Hb_003058_200 Hb_002072_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_002072_010--Hb_000674_010 Hb_002072_010--Hb_000244_260 Hb_005000_090 Hb_005000_090 Hb_002072_010--Hb_005000_090 Hb_000019_170 Hb_000019_170 Hb_002072_010--Hb_000019_170 Hb_000679_040 Hb_000679_040 Hb_003371_190--Hb_000679_040 Hb_003371_190--Hb_002072_010 Hb_010381_020 Hb_010381_020 Hb_003371_190--Hb_010381_020 Hb_009535_030 Hb_009535_030 Hb_003371_190--Hb_009535_030 Hb_003371_190--Hb_000254_070 Hb_000003_310--Hb_000254_070 Hb_000701_030 Hb_000701_030 Hb_000003_310--Hb_000701_030 Hb_021576_070 Hb_021576_070 Hb_000003_310--Hb_021576_070 Hb_000684_310 Hb_000684_310 Hb_000003_310--Hb_000684_310 Hb_000003_310--Hb_000679_040 Hb_000418_020 Hb_000418_020 Hb_000003_310--Hb_000418_020 Hb_000244_260--Hb_000254_070 Hb_011310_050 Hb_011310_050 Hb_000244_260--Hb_011310_050 Hb_000244_260--Hb_003058_200 Hb_002026_070 Hb_002026_070 Hb_000244_260--Hb_002026_070 Hb_000254_070--Hb_000701_030 Hb_000254_070--Hb_000679_040 Hb_007317_020 Hb_007317_020 Hb_000254_070--Hb_007317_020 Hb_000254_070--Hb_000418_020 Hb_000494_030 Hb_000494_030 Hb_000254_070--Hb_000494_030 Hb_002367_110--Hb_002072_010 Hb_031931_020 Hb_031931_020 Hb_002367_110--Hb_031931_020 Hb_002367_110--Hb_000003_310 Hb_023765_010 Hb_023765_010 Hb_002367_110--Hb_023765_010 Hb_002367_110--Hb_000674_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.4612 170.399 111.98 509.683 81.2053 92.7927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.9316 24.6993 48.0606 339.545 240.041

CAGE analysis