Hb_031931_020

Information

Type -
Description -
Location Contig31931: 29507-47433
Sequence    

Annotation

kegg
ID rcu:RCOM_0998850
description Minor histocompatibility antigen H13, putative
nr
ID XP_002529686.1
description Minor histocompatibility antigen H13, putative [Ricinus communis]
swissprot
ID Q4V3B8
description Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1
trembl
ID B9SUL7
description Minor histocompatibility antigen H13, putative OS=Ricinus communis GN=RCOM_0998850 PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptide peptidase-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33655: 29649-47517
cDNA
(Sanger)
(ID:Location)		 002_M03.ab1: 29649-33813 , 003_D16.ab1: 29678-38536

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031931_020 0.0 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
2 Hb_000140_450 0.0898572881 - - PREDICTED: calreticulin-3-like [Populus euphratica]
3 Hb_005062_110 0.1003514821 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
4 Hb_000320_290 0.1071887871 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
5 Hb_000058_110 0.1080894723 - - PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Jatropha curcas]
6 Hb_002367_110 0.109708443 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
7 Hb_001159_030 0.1097656989 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
8 Hb_002226_080 0.1128438367 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
9 Hb_012194_060 0.1176844689 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
10 Hb_000054_040 0.1177751068 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
11 Hb_150346_010 0.1190907436 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_000130_180 0.1233956749 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
13 Hb_010042_030 0.1264605899 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
14 Hb_000997_070 0.1268753764 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
15 Hb_000077_290 0.1270720602 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000035_330 0.1271162884 - - Transmembrane protein 85 [Theobroma cacao]
17 Hb_000359_190 0.1271194289 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
18 Hb_014361_060 0.1277913029 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
19 Hb_000284_230 0.1295959755 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
20 Hb_000849_080 0.1298004237 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_031931_020 Hb_031931_020 Hb_000140_450 Hb_000140_450 Hb_031931_020--Hb_000140_450 Hb_005062_110 Hb_005062_110 Hb_031931_020--Hb_005062_110 Hb_000320_290 Hb_000320_290 Hb_031931_020--Hb_000320_290 Hb_000058_110 Hb_000058_110 Hb_031931_020--Hb_000058_110 Hb_002367_110 Hb_002367_110 Hb_031931_020--Hb_002367_110 Hb_001159_030 Hb_001159_030 Hb_031931_020--Hb_001159_030 Hb_000849_080 Hb_000849_080 Hb_000140_450--Hb_000849_080 Hb_073973_150 Hb_073973_150 Hb_000140_450--Hb_073973_150 Hb_000140_450--Hb_000320_290 Hb_001194_020 Hb_001194_020 Hb_000140_450--Hb_001194_020 Hb_000284_230 Hb_000284_230 Hb_000140_450--Hb_000284_230 Hb_000085_260 Hb_000085_260 Hb_005062_110--Hb_000085_260 Hb_010042_030 Hb_010042_030 Hb_005062_110--Hb_010042_030 Hb_005062_110--Hb_001159_030 Hb_000503_020 Hb_000503_020 Hb_005062_110--Hb_000503_020 Hb_000622_110 Hb_000622_110 Hb_005062_110--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_005062_110--Hb_002486_050 Hb_000054_040 Hb_000054_040 Hb_000320_290--Hb_000054_040 Hb_121089_030 Hb_121089_030 Hb_000320_290--Hb_121089_030 Hb_000320_290--Hb_010042_030 Hb_188063_050 Hb_188063_050 Hb_000320_290--Hb_188063_050 Hb_030982_010 Hb_030982_010 Hb_000320_290--Hb_030982_010 Hb_000098_050 Hb_000098_050 Hb_000320_290--Hb_000098_050 Hb_002226_080 Hb_002226_080 Hb_000058_110--Hb_002226_080 Hb_001440_020 Hb_001440_020 Hb_000058_110--Hb_001440_020 Hb_009252_030 Hb_009252_030 Hb_000058_110--Hb_009252_030 Hb_001491_030 Hb_001491_030 Hb_000058_110--Hb_001491_030 Hb_005977_100 Hb_005977_100 Hb_000058_110--Hb_005977_100 Hb_000359_190 Hb_000359_190 Hb_000058_110--Hb_000359_190 Hb_002072_010 Hb_002072_010 Hb_002367_110--Hb_002072_010 Hb_030565_110 Hb_030565_110 Hb_002367_110--Hb_030565_110 Hb_000003_310 Hb_000003_310 Hb_002367_110--Hb_000003_310 Hb_023765_010 Hb_023765_010 Hb_002367_110--Hb_023765_010 Hb_000674_010 Hb_000674_010 Hb_002367_110--Hb_000674_010 Hb_001159_030--Hb_000085_260 Hb_001159_030--Hb_010042_030 Hb_002007_260 Hb_002007_260 Hb_001159_030--Hb_002007_260 Hb_003038_040 Hb_003038_040 Hb_001159_030--Hb_003038_040 Hb_001097_040 Hb_001097_040 Hb_001159_030--Hb_001097_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5933 20.0208 22.3951 69.1758 31.9734 29.0169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.99003 5.53815 10.572 32.7246 35.8229

CAGE analysis