Hb_000140_450

Information

Type -
Description -
Location Contig140: 439828-446627
Sequence    

Annotation

kegg
ID pop:POPTR_0017s05490g
description hypothetical protein
nr
ID XP_011011524.1
description PREDICTED: calreticulin-3-like [Populus euphratica]
swissprot
ID O04153
description Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=1 SV=2
trembl
ID A0A067LI32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20899 PE=3 SV=1
Gene Ontology
ID GO:0005788
description calreticulin-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10879: 439828-446215 , PASA_asmbl_10881: 445738-446061
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_450 0.0 - - PREDICTED: calreticulin-3-like [Populus euphratica]
2 Hb_000849_080 0.0763337039 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
3 Hb_031931_020 0.0898572881 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
4 Hb_073973_150 0.0964068583 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
5 Hb_000320_290 0.0989394526 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
6 Hb_001194_020 0.1081341504 - - microtubule associated protein xmap215, putative [Ricinus communis]
7 Hb_000284_230 0.1089874696 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
8 Hb_002749_080 0.1108050915 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008397_010 0.1114048161 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
10 Hb_002784_030 0.1117576244 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
11 Hb_188063_050 0.1133925878 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
12 Hb_024570_040 0.1133995834 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
13 Hb_000640_070 0.1141888811 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
14 Hb_002007_260 0.1160009675 - - beta-mannosidase, putative [Ricinus communis]
15 Hb_000562_050 0.1172633564 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
16 Hb_150346_010 0.1199479949 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_006355_020 0.1206485087 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
18 Hb_000054_040 0.1223539109 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
19 Hb_001733_030 0.1225157237 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
20 Hb_000575_100 0.122639435 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_450 Hb_000140_450 Hb_000849_080 Hb_000849_080 Hb_000140_450--Hb_000849_080 Hb_031931_020 Hb_031931_020 Hb_000140_450--Hb_031931_020 Hb_073973_150 Hb_073973_150 Hb_000140_450--Hb_073973_150 Hb_000320_290 Hb_000320_290 Hb_000140_450--Hb_000320_290 Hb_001194_020 Hb_001194_020 Hb_000140_450--Hb_001194_020 Hb_000284_230 Hb_000284_230 Hb_000140_450--Hb_000284_230 Hb_103688_010 Hb_103688_010 Hb_000849_080--Hb_103688_010 Hb_002007_260 Hb_002007_260 Hb_000849_080--Hb_002007_260 Hb_002808_020 Hb_002808_020 Hb_000849_080--Hb_002808_020 Hb_000575_100 Hb_000575_100 Hb_000849_080--Hb_000575_100 Hb_024570_040 Hb_024570_040 Hb_000849_080--Hb_024570_040 Hb_005062_110 Hb_005062_110 Hb_031931_020--Hb_005062_110 Hb_031931_020--Hb_000320_290 Hb_000058_110 Hb_000058_110 Hb_031931_020--Hb_000058_110 Hb_002367_110 Hb_002367_110 Hb_031931_020--Hb_002367_110 Hb_001159_030 Hb_001159_030 Hb_031931_020--Hb_001159_030 Hb_000640_070 Hb_000640_070 Hb_073973_150--Hb_000640_070 Hb_073973_150--Hb_001194_020 Hb_008397_010 Hb_008397_010 Hb_073973_150--Hb_008397_010 Hb_073973_150--Hb_000284_230 Hb_003104_040 Hb_003104_040 Hb_073973_150--Hb_003104_040 Hb_002475_040 Hb_002475_040 Hb_073973_150--Hb_002475_040 Hb_000054_040 Hb_000054_040 Hb_000320_290--Hb_000054_040 Hb_121089_030 Hb_121089_030 Hb_000320_290--Hb_121089_030 Hb_010042_030 Hb_010042_030 Hb_000320_290--Hb_010042_030 Hb_188063_050 Hb_188063_050 Hb_000320_290--Hb_188063_050 Hb_030982_010 Hb_030982_010 Hb_000320_290--Hb_030982_010 Hb_000098_050 Hb_000098_050 Hb_000320_290--Hb_000098_050 Hb_001194_020--Hb_008397_010 Hb_001194_020--Hb_000284_230 Hb_001194_020--Hb_000640_070 Hb_006355_020 Hb_006355_020 Hb_001194_020--Hb_006355_020 Hb_001059_130 Hb_001059_130 Hb_001194_020--Hb_001059_130 Hb_000284_230--Hb_002475_040 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_000284_230--Hb_008397_010 Hb_000284_230--Hb_006355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4459 20.5102 33.8128 59.3958 37.5314 35.7509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7289 6.2332 8.88923 45.6995 43.4458

CAGE analysis