Hb_005062_110

Information

Type -
Description -
Location Contig5062: 81346-88920
Sequence    

Annotation

kegg
ID rcu:RCOM_0321070
description endomembrane protein emp70, putative
nr
ID XP_012071292.1
description PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
swissprot
ID Q940G0
description Transmembrane 9 superfamily member 1 OS=Arabidopsis thaliana GN=TMN1 PE=1 SV=1
trembl
ID A0A067KRI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04973 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46126: 81360-88916 , PASA_asmbl_46127: 81443-84875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005062_110 0.0 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
2 Hb_000085_260 0.057368817 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
3 Hb_010042_030 0.062759746 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
4 Hb_001159_030 0.0635041286 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
5 Hb_000503_020 0.0661147278 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
6 Hb_000622_110 0.0718871951 - - cmp-sialic acid transporter, putative [Ricinus communis]
7 Hb_002486_050 0.0727896534 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
8 Hb_000320_290 0.0740548561 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
9 Hb_000098_050 0.0752118834 - - BnaCnng11900D [Brassica napus]
10 Hb_000054_040 0.0803240184 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
11 Hb_012194_060 0.0862140904 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
12 Hb_000256_230 0.086410412 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
13 Hb_003209_130 0.089405195 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
14 Hb_002007_260 0.0905562174 - - beta-mannosidase, putative [Ricinus communis]
15 Hb_044486_020 0.0911338053 - - CASTOR protein [Glycine max]
16 Hb_000035_220 0.0934398934 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
17 Hb_000359_190 0.0935544832 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
18 Hb_000665_170 0.0942142405 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
19 Hb_007286_020 0.097034135 - - hypothetical protein L484_010675 [Morus notabilis]
20 Hb_001246_130 0.0973000626 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005062_110 Hb_005062_110 Hb_000085_260 Hb_000085_260 Hb_005062_110--Hb_000085_260 Hb_010042_030 Hb_010042_030 Hb_005062_110--Hb_010042_030 Hb_001159_030 Hb_001159_030 Hb_005062_110--Hb_001159_030 Hb_000503_020 Hb_000503_020 Hb_005062_110--Hb_000503_020 Hb_000622_110 Hb_000622_110 Hb_005062_110--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_005062_110--Hb_002486_050 Hb_000085_260--Hb_001159_030 Hb_000085_260--Hb_010042_030 Hb_000098_050 Hb_000098_050 Hb_000085_260--Hb_000098_050 Hb_000085_260--Hb_000503_020 Hb_000679_100 Hb_000679_100 Hb_000085_260--Hb_000679_100 Hb_010042_030--Hb_001159_030 Hb_002007_260 Hb_002007_260 Hb_010042_030--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_010042_030--Hb_000579_130 Hb_000320_290 Hb_000320_290 Hb_010042_030--Hb_000320_290 Hb_001159_030--Hb_002007_260 Hb_003038_040 Hb_003038_040 Hb_001159_030--Hb_003038_040 Hb_001097_040 Hb_001097_040 Hb_001159_030--Hb_001097_040 Hb_000054_040 Hb_000054_040 Hb_000503_020--Hb_000054_040 Hb_000503_020--Hb_000320_290 Hb_006120_050 Hb_006120_050 Hb_000503_020--Hb_006120_050 Hb_001246_130 Hb_001246_130 Hb_000503_020--Hb_001246_130 Hb_000256_230 Hb_000256_230 Hb_000622_110--Hb_000256_230 Hb_000622_110--Hb_002486_050 Hb_000926_340 Hb_000926_340 Hb_000622_110--Hb_000926_340 Hb_003209_130 Hb_003209_130 Hb_000622_110--Hb_003209_130 Hb_086639_080 Hb_086639_080 Hb_000622_110--Hb_086639_080 Hb_002486_050--Hb_003209_130 Hb_002486_050--Hb_000256_230 Hb_000665_170 Hb_000665_170 Hb_002486_050--Hb_000665_170 Hb_002486_050--Hb_000085_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.503 35.4607 43.1443 87.586 25.1956 34.0975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7584 11.056 13.5082 37.1521 39.9079

CAGE analysis