Hb_000926_340

Information

Type -
Description -
Location Contig926: 317131-322352
Sequence    

Annotation

kegg
ID pmum:103326541
description EH domain-containing protein 1
nr
ID XP_012070902.1
description PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q94CF0
description EH domain-containing protein 1 OS=Arabidopsis thaliana GN=EHD1 PE=1 SV=1
trembl
ID A0A067L542
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00946 PE=4 SV=1
Gene Ontology
ID GO:0005509
description eh domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62702: 288623-319646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_340 0.0 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
2 Hb_000622_110 0.0761369728 - - cmp-sialic acid transporter, putative [Ricinus communis]
3 Hb_004126_040 0.0873795319 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000418_020 0.0906901438 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
5 Hb_000256_230 0.094174563 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
6 Hb_002486_050 0.0959178028 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
7 Hb_003209_130 0.0975202997 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_005062_110 0.1000595366 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
9 Hb_132082_010 0.1025868903 - - hypothetical protein VITISV_030895 [Vitis vinifera]
10 Hb_000389_030 0.1028141586 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
11 Hb_000665_170 0.1035185969 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
12 Hb_000134_120 0.103959073 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
13 Hb_000003_310 0.1070098905 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
14 Hb_002739_120 0.1083634635 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
15 Hb_002217_080 0.1119286057 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
16 Hb_003777_030 0.1128563684 - - Exocyst complex component, putative [Ricinus communis]
17 Hb_001250_050 0.1172954931 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
18 Hb_014361_060 0.1182109431 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
19 Hb_004055_050 0.1203876759 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
20 Hb_002942_230 0.121711616 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]

Gene co-expression network

sample Hb_000926_340 Hb_000926_340 Hb_000622_110 Hb_000622_110 Hb_000926_340--Hb_000622_110 Hb_004126_040 Hb_004126_040 Hb_000926_340--Hb_004126_040 Hb_000418_020 Hb_000418_020 Hb_000926_340--Hb_000418_020 Hb_000256_230 Hb_000256_230 Hb_000926_340--Hb_000256_230 Hb_002486_050 Hb_002486_050 Hb_000926_340--Hb_002486_050 Hb_003209_130 Hb_003209_130 Hb_000926_340--Hb_003209_130 Hb_000622_110--Hb_000256_230 Hb_005062_110 Hb_005062_110 Hb_000622_110--Hb_005062_110 Hb_000622_110--Hb_002486_050 Hb_000622_110--Hb_003209_130 Hb_086639_080 Hb_086639_080 Hb_000622_110--Hb_086639_080 Hb_004126_040--Hb_000256_230 Hb_000389_030 Hb_000389_030 Hb_004126_040--Hb_000389_030 Hb_000665_170 Hb_000665_170 Hb_004126_040--Hb_000665_170 Hb_004126_040--Hb_003209_130 Hb_004126_040--Hb_000622_110 Hb_003878_200 Hb_003878_200 Hb_004126_040--Hb_003878_200 Hb_000418_020--Hb_000256_230 Hb_000418_020--Hb_000665_170 Hb_002687_200 Hb_002687_200 Hb_000418_020--Hb_002687_200 Hb_021576_070 Hb_021576_070 Hb_000418_020--Hb_021576_070 Hb_002739_120 Hb_002739_120 Hb_000418_020--Hb_002739_120 Hb_003777_030 Hb_003777_030 Hb_000418_020--Hb_003777_030 Hb_000256_230--Hb_000665_170 Hb_000256_230--Hb_000389_030 Hb_000256_230--Hb_003209_130 Hb_000256_230--Hb_002486_050 Hb_002486_050--Hb_003209_130 Hb_002486_050--Hb_005062_110 Hb_002486_050--Hb_000665_170 Hb_000085_260 Hb_000085_260 Hb_002486_050--Hb_000085_260 Hb_003209_130--Hb_000665_170 Hb_005535_080 Hb_005535_080 Hb_003209_130--Hb_005535_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.401609 0.977813 1.69445 3.49013 0.673952 0.887164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.517528 0.593852 0.22547 1.32255 1.32831

CAGE analysis