Hb_000622_110

Information

Type -
Description -
Location Contig622: 120779-124046
Sequence    

Annotation

kegg
ID rcu:RCOM_0149740
description cmp-sialic acid transporter, putative
nr
ID XP_002532660.1
description cmp-sialic acid transporter, putative [Ricinus communis]
swissprot
ID Q8LGE9
description CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1
trembl
ID B9T341
description Cmp-sialic acid transporter, putative OS=Ricinus communis GN=RCOM_0149740 PE=4 SV=1
Gene Ontology
ID GO:0000139
description cmp-sialic acid transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51556: 120851-124045 , PASA_asmbl_51557: 122006-122987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_110 0.0 - - cmp-sialic acid transporter, putative [Ricinus communis]
2 Hb_000256_230 0.0689302956 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
3 Hb_005062_110 0.0718871951 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
4 Hb_002486_050 0.075044373 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
5 Hb_000926_340 0.0761369728 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
6 Hb_003209_130 0.0779959432 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_086639_080 0.0787096503 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004055_050 0.0797409822 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
9 Hb_004126_040 0.0821929417 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000665_170 0.0822832372 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
11 Hb_007137_050 0.0825923012 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_000389_030 0.0857556644 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
13 Hb_004064_040 0.0869578782 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
14 Hb_007286_020 0.0884985021 - - hypothetical protein L484_010675 [Morus notabilis]
15 Hb_001250_050 0.0895807602 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
16 Hb_000836_300 0.0900570719 - - caax prenyl protease ste24, putative [Ricinus communis]
17 Hb_002740_090 0.0902164131 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
18 Hb_188063_050 0.0903131374 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
19 Hb_010042_030 0.0927842934 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
20 Hb_003777_030 0.0936562247 - - Exocyst complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_000622_110 Hb_000622_110 Hb_000256_230 Hb_000256_230 Hb_000622_110--Hb_000256_230 Hb_005062_110 Hb_005062_110 Hb_000622_110--Hb_005062_110 Hb_002486_050 Hb_002486_050 Hb_000622_110--Hb_002486_050 Hb_000926_340 Hb_000926_340 Hb_000622_110--Hb_000926_340 Hb_003209_130 Hb_003209_130 Hb_000622_110--Hb_003209_130 Hb_086639_080 Hb_086639_080 Hb_000622_110--Hb_086639_080 Hb_000665_170 Hb_000665_170 Hb_000256_230--Hb_000665_170 Hb_000389_030 Hb_000389_030 Hb_000256_230--Hb_000389_030 Hb_000256_230--Hb_003209_130 Hb_004126_040 Hb_004126_040 Hb_000256_230--Hb_004126_040 Hb_000256_230--Hb_002486_050 Hb_000085_260 Hb_000085_260 Hb_005062_110--Hb_000085_260 Hb_010042_030 Hb_010042_030 Hb_005062_110--Hb_010042_030 Hb_001159_030 Hb_001159_030 Hb_005062_110--Hb_001159_030 Hb_000503_020 Hb_000503_020 Hb_005062_110--Hb_000503_020 Hb_005062_110--Hb_002486_050 Hb_002486_050--Hb_003209_130 Hb_002486_050--Hb_000665_170 Hb_002486_050--Hb_000085_260 Hb_000926_340--Hb_004126_040 Hb_000418_020 Hb_000418_020 Hb_000926_340--Hb_000418_020 Hb_000926_340--Hb_000256_230 Hb_000926_340--Hb_002486_050 Hb_000926_340--Hb_003209_130 Hb_003209_130--Hb_000665_170 Hb_005535_080 Hb_005535_080 Hb_003209_130--Hb_005535_080 Hb_003209_130--Hb_004126_040 Hb_000139_530 Hb_000139_530 Hb_086639_080--Hb_000139_530 Hb_007286_020 Hb_007286_020 Hb_086639_080--Hb_007286_020 Hb_000002_480 Hb_000002_480 Hb_086639_080--Hb_000002_480 Hb_000331_370 Hb_000331_370 Hb_086639_080--Hb_000331_370 Hb_004102_170 Hb_004102_170 Hb_086639_080--Hb_004102_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19703 4.61779 7.11672 14.0147 3.45477 4.49448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80973 2.91257 1.70672 6.50254 5.04884

CAGE analysis