Hb_000139_530

Information

Type -
Description -
Location Contig139: 531229-536354
Sequence    

Annotation

kegg
ID rcu:RCOM_0912620
description hypothetical protein
nr
ID XP_002517154.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q55909
description TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
trembl
ID B9RTT5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0912620 PE=4 SV=1
Gene Ontology
ID GO:0015824
description transmembrane protein 64

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10684: 531309-536515 , PASA_asmbl_10685: 532721-533234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_530 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005797_010 0.0666983111 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
3 Hb_086639_080 0.0744364091 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011214_160 0.0800232414 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
5 Hb_001087_030 0.0820476424 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
6 Hb_000009_400 0.0836247002 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
7 Hb_004102_170 0.0837472725 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
8 Hb_000049_020 0.0860959849 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
9 Hb_003929_170 0.0868367231 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
10 Hb_000371_090 0.0895292486 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
11 Hb_000002_480 0.0918381497 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
12 Hb_159809_030 0.0924009997 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
13 Hb_001002_060 0.0929044123 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
14 Hb_001269_330 0.0934190802 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
15 Hb_001227_130 0.0934840771 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
16 Hb_023313_040 0.0937113842 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
17 Hb_002728_080 0.0948257151 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_000146_040 0.0950353472 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
19 Hb_007481_010 0.095680947 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
20 Hb_000320_290 0.0963235763 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]

Gene co-expression network

sample Hb_000139_530 Hb_000139_530 Hb_005797_010 Hb_005797_010 Hb_000139_530--Hb_005797_010 Hb_086639_080 Hb_086639_080 Hb_000139_530--Hb_086639_080 Hb_011214_160 Hb_011214_160 Hb_000139_530--Hb_011214_160 Hb_001087_030 Hb_001087_030 Hb_000139_530--Hb_001087_030 Hb_000009_400 Hb_000009_400 Hb_000139_530--Hb_000009_400 Hb_004102_170 Hb_004102_170 Hb_000139_530--Hb_004102_170 Hb_007481_010 Hb_007481_010 Hb_005797_010--Hb_007481_010 Hb_002728_080 Hb_002728_080 Hb_005797_010--Hb_002728_080 Hb_005797_010--Hb_004102_170 Hb_023313_030 Hb_023313_030 Hb_005797_010--Hb_023313_030 Hb_005797_010--Hb_000009_400 Hb_007286_020 Hb_007286_020 Hb_086639_080--Hb_007286_020 Hb_000622_110 Hb_000622_110 Hb_086639_080--Hb_000622_110 Hb_000002_480 Hb_000002_480 Hb_086639_080--Hb_000002_480 Hb_000331_370 Hb_000331_370 Hb_086639_080--Hb_000331_370 Hb_086639_080--Hb_004102_170 Hb_003998_040 Hb_003998_040 Hb_011214_160--Hb_003998_040 Hb_001703_050 Hb_001703_050 Hb_011214_160--Hb_001703_050 Hb_000371_090 Hb_000371_090 Hb_011214_160--Hb_000371_090 Hb_001051_070 Hb_001051_070 Hb_011214_160--Hb_001051_070 Hb_000197_020 Hb_000197_020 Hb_011214_160--Hb_000197_020 Hb_003929_170 Hb_003929_170 Hb_001087_030--Hb_003929_170 Hb_004754_050 Hb_004754_050 Hb_001087_030--Hb_004754_050 Hb_001269_330 Hb_001269_330 Hb_001087_030--Hb_001269_330 Hb_000058_130 Hb_000058_130 Hb_001087_030--Hb_000058_130 Hb_000049_020 Hb_000049_020 Hb_001087_030--Hb_000049_020 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_000009_400--Hb_003929_170 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020 Hb_000787_160 Hb_000787_160 Hb_004102_170--Hb_000787_160 Hb_004102_170--Hb_000049_020 Hb_000146_040 Hb_000146_040 Hb_004102_170--Hb_000146_040 Hb_000345_160 Hb_000345_160 Hb_004102_170--Hb_000345_160 Hb_001405_210 Hb_001405_210 Hb_004102_170--Hb_001405_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5777 12.3541 18.6026 32.9505 16.4706 12.582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3024 7.91161 10.0203 12.9114 12.7294

CAGE analysis